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比较日本大阪收容所猫源产白喉毒素的溃疡棒状杆菌分离株的全基因组分析。

Comparative whole-genome analysis of diphtheria toxin-producing Corynebacterium ulcerans isolates from sheltered cats in Osaka, Japan.

机构信息

Division of Microbiology, Osaka Institute of Public Health, Osaka, Japan.

出版信息

J Vet Med Sci. 2023 Jul 1;85(7):735-738. doi: 10.1292/jvms.22-0576. Epub 2023 May 31.

DOI:10.1292/jvms.22-0576
PMID:37258129
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10372255/
Abstract

Diphtheria toxin-producing Corynebacterium ulcerans is a zoonotic pathogen that causes human diphtheria-like symptoms. After performing whole-genome analysis of the five isolates from sheltered cats in Osaka, Japan, we compared them with genome sequences of 25 strains of C. ulcerans from a public database. The five isolates from cats harbored 14 genes encoding possible virulence factors in diphtheria-toxin-producing C. ulcerans. These isolates also had diphtheria toxin gene-encoding prophage in their chromosome, although differences were found in other prophages possession. Whole-genome single-nucleotide polymorphism analysis showed that cats' isolates belonged to ST337 branch, as were strains from Japanese human patients, with 41 or more single-nucleotide polymorphisms variations. High-resolution single-nucleotide polymorphism analysis of C. ulcerans was sufficient to distinguish cats' isolates clearly as not different by conventional genotyping methods.

摘要

产白喉毒素溃疡棒状杆菌是一种人畜共患病病原体,可引起类似白喉的人类症状。在对日本大阪收容所的五只猫的分离株进行全基因组分析后,我们将它们与公共数据库中 25 株产白喉毒素溃疡棒状杆菌的基因组序列进行了比较。这五只来自猫的分离株携带了 14 个编码产白喉毒素溃疡棒状杆菌可能毒力因子的基因。这些分离株的染色体中也存在编码白喉毒素的噬菌体,但其他噬菌体的存在存在差异。全基因组单核苷酸多态性分析显示,猫的分离株属于 ST337 分支,与来自日本人类患者的菌株相同,有 41 个或更多的单核苷酸多态性变异。对产白喉毒素溃疡棒状杆菌的高分辨率单核苷酸多态性分析足以清晰地区分猫的分离株,而常规的基因分型方法则无法区分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/611d/10372255/f7c099de6a7a/jvms-85-735-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/611d/10372255/f7c099de6a7a/jvms-85-735-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/611d/10372255/f7c099de6a7a/jvms-85-735-g001.jpg

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本文引用的文献

1
Limitations of Ribotyping as Genotyping Method for Corynebacterium ulcerans.棒状杆菌溃疡亚种基因分型方法——核糖体分型法的局限性
Emerg Infect Dis. 2020 Oct;26(10):2457-2459. doi: 10.3201/eid2610.200086.
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NGS-based phylogeny of diphtheria-related pathogenicity factors in different Corynebacterium spp. implies species-specific virulence transmission.基于 NGS 的不同棒状杆菌属中白喉相关致病因子的系统发育表明了种特异性毒力传递。
BMC Microbiol. 2019 Feb 1;19(1):28. doi: 10.1186/s12866-019-1402-1.
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Genomic analyses reveal two distinct lineages of strains.
基因组分析揭示了菌株的两个不同谱系。
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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST:一个灵活的原核生物基因组注释管道,用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
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PHASTER: a better, faster version of the PHAST phage search tool.PHASTER:PHAST噬菌体搜索工具的一个更好、更快的版本。
Nucleic Acids Res. 2016 Jul 8;44(W1):W16-21. doi: 10.1093/nar/gkw387. Epub 2016 May 3.
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Toxigenic Corynebacterium ulcerans isolated from a wild bird (ural owl) and its feed (shrew-moles): comparison of molecular types with human isolates.从野生鸟类(乌林鸮)及其食物(水鼩鼱)中分离出的产毒溃疡棒状杆菌:与人类分离株的分子类型比较。
BMC Res Notes. 2016 Mar 22;9:181. doi: 10.1186/s13104-016-1979-5.
8
Next generation sequencing analysis of nine Corynebacterium ulcerans isolates reveals zoonotic transmission and a novel putative diphtheria toxin-encoding pathogenicity island.九株溃疡棒状杆菌分离株的下一代测序分析显示其存在人畜共患病传播,并揭示了一个新的可能编码白喉毒素的致病性岛。
Genome Med. 2014 Nov 28;6(11):113. doi: 10.1186/s13073-014-0113-3. eCollection 2014.
9
Solving the problem of comparing whole bacterial genomes across different sequencing platforms.解决跨不同测序平台比较完整细菌基因组的问题。
PLoS One. 2014 Aug 11;9(8):e104984. doi: 10.1371/journal.pone.0104984. eCollection 2014.
10
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BMC Microbiol. 2012 May 14;12:72. doi: 10.1186/1471-2180-12-72.