Suppr超能文献

泛癌症分析 USP5 在人类癌症中的作用。

A pan-cancer analysis of the role of USP5 in human cancers.

机构信息

Department of Pathology, Zhuzhou Hospital Affiliated to Xiangya School of Medicine, Central South University, Zhuzhou, 412007, Hunan, China.

Department of Hematology, Zhuzhou Hospital Affiliated to Xiangya School of Medicine, Central South University, Zhuzhou, 412007, Hunan, China.

出版信息

Sci Rep. 2023 Jun 2;13(1):8972. doi: 10.1038/s41598-023-35793-2.

Abstract

Posttranslational modifications (PTM) such as acetylation, deubiquitination, and phosphorylation of proteins, play important roles in various kinds of cancer progression. Ubiquitin-specific proteinase 5 (USP5), a unique member of deubiquitinating enzymes (DUBs) which recognizes unanchored polyubiquitin specifically, could regulate the stability of many tumorigenesis-associated proteins to influence cancer initiation and progression. However, the diverse biological significance of USP5 in pan-cancer has not been systematically and comprehensively studied. Here, we explored the role of USP5 in pan-cancer using The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) database, and we also acquired and analyzed data via various software and web platforms such as R, GEPIA2.0, HPA, TISIDB, cBioPortal, UALCAN, TIMER 2.0, CancerSEA and BioGRID. USP5 expression was high in most cancers and differed significantly in different molecular and immune subtypes of cancers. In addition, USP5 had certain diagnostic value in multiple cancers, and high expression of USP5 generally predicted poor prognosis for cancer patients. We also found that the most frequent genetic alterations type of USP5 was mutation, and the DNA methylation level of USP5 decreased in various cancers. Furthermore, USP5 expression correlated with cancer-associated fibroblasts (CAFs), endothelial cells (EC) and genetic markers of immunodulators in cancers. Moreover, the result from single cell sequencing showed that USP5 could regulate several tumor biological behaviors such as apoptosis, DNA damage and metastasis. Gene enrichment analysis indicated "spliceosome" and "RNA splicing" may be the critical mechanism for USP5 to involve in cancer. Taken together, our study elucidates the biological significance of USP5 in the diagnosis, prognosis and immune in human pan-cancer.

摘要

蛋白质的翻译后修饰(PTM),如乙酰化、去泛素化和磷酸化,在各种癌症进展中发挥着重要作用。泛素特异性蛋白酶 5(USP5)是去泛素化酶(DUBs)的独特成员,它能特异性识别无锚定多泛素,可以调节许多致癌相关蛋白的稳定性,从而影响癌症的发生和发展。然而,USP5 在泛癌中的多样化生物学意义尚未得到系统和全面的研究。在这里,我们使用癌症基因组图谱(TCGA)和基因型组织表达(GTEx)数据库来研究 USP5 在泛癌中的作用,我们还通过 R、GEPIA2.0、HPA、TISIDB、cBioPortal、UALCAN、TIMER 2.0、CancerSEA 和 BioGRID 等各种软件和网络平台获取和分析数据。USP5 在大多数癌症中表达较高,在不同癌症的分子和免疫亚型中差异显著。此外,USP5 在多种癌症中有一定的诊断价值,高表达的 USP5 通常预示着癌症患者预后不良。我们还发现,USP5 最常见的遗传改变类型是突变,USP5 的 DNA 甲基化水平在各种癌症中降低。此外,USP5 的表达与癌症相关成纤维细胞(CAFs)、内皮细胞(EC)和癌症中免疫调节剂的遗传标志物相关。此外,单细胞测序的结果表明,USP5 可以调节几种肿瘤生物学行为,如细胞凋亡、DNA 损伤和转移。基因富集分析表明,“剪接体”和“RNA 剪接”可能是 USP5 参与癌症的关键机制。综上所述,我们的研究阐明了 USP5 在人类泛癌的诊断、预后和免疫中的生物学意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdff/10238416/7472ff101203/41598_2023_35793_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验