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通过ProTracer对体内细胞增殖进行遗传记录。

Genetic recording of in vivo cell proliferation by ProTracer.

作者信息

Liu Xiuxiu, Weng Wendong, He Lingjuan, Zhou Bin

机构信息

State Key Laboratory of Cell Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.

School of Life Sciences, Westlake University, Hangzhou, China.

出版信息

Nat Protoc. 2023 Jul;18(7):2349-2373. doi: 10.1038/s41596-023-00833-8. Epub 2023 Jun 2.

DOI:10.1038/s41596-023-00833-8
PMID:37268780
Abstract

The ability to experimentally measure cell proliferation is the basis for understanding the sources of cells that drive organ development, tissue regeneration and repair. Recently, we generated a genetic approach to detect cell proliferation: we used genetic lineage-tracing technologies to achieve seamless recording of in vivo cell proliferation in a tissue-specific manner. We provide a detailed protocol (generation of mouse lines, characterization of mouse lines, mouse line crossing and cell-proliferation tracing) for using this genetic system to study cell proliferation. This cell-proliferation tracing system, which we term 'ProTracer' (Proliferation Tracer), permits lifelong noninvasive monitoring of cell proliferation of specific cell lineages in live animals. Compared with other short-term strategies that require execution of animals, ProTracer does not require sampling or animal sacrifice for tissue processing. To highlight these features, we used ProTracer to study the proliferation of hepatocytes during liver homeostasis and after tissue injury in mice. We show that the protocol is applicable to study any in vivo cell proliferation, which takes ~9 months to finish from mouse generation to data analysis. This protocol can easily be carried out by researchers skilled in mouse-related experiments.

摘要

通过实验测量细胞增殖的能力是理解驱动器官发育、组织再生和修复的细胞来源的基础。最近,我们开发了一种检测细胞增殖的遗传学方法:我们利用遗传谱系追踪技术以组织特异性方式实现对体内细胞增殖的无缝记录。我们提供了一个详细的方案(小鼠品系的生成、小鼠品系的表征、小鼠品系杂交和细胞增殖追踪),用于使用这种遗传系统研究细胞增殖。我们将这个细胞增殖追踪系统称为“ProTracer”(增殖追踪器),它允许对活体动物中特定细胞谱系的细胞增殖进行终身无创监测。与其他需要处死动物的短期策略相比,ProTracer不需要取样或牺牲动物来进行组织处理。为了突出这些特点,我们使用ProTracer研究了小鼠肝脏稳态期间和组织损伤后肝细胞的增殖。我们表明该方案适用于研究任何体内细胞增殖,从小鼠生成到数据分析大约需要9个月时间。该方案可以由精通小鼠相关实验的研究人员轻松完成。

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Genetic recording of in vivo cell proliferation by ProTracer.通过ProTracer对体内细胞增殖进行遗传记录。
Nat Protoc. 2023 Jul;18(7):2349-2373. doi: 10.1038/s41596-023-00833-8. Epub 2023 Jun 2.
2
Proliferation tracing reveals regional hepatocyte generation in liver homeostasis and repair.增殖示踪揭示了肝内稳态和修复中的区域性肝细胞生成。
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Reconstructing Progenitor State Hierarchy and Dynamics Using Lineage Barcoding Data.利用谱系条形码数据重建祖细胞状态层次结构和动态变化
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本文引用的文献

1
Seamless Genetic Recording of Transiently Activated Mesenchymal Gene Expression in Endothelial Cells During Cardiac Fibrosis.心脏纤维化过程中内皮细胞中转录激活的间充质基因表达的无缝遗传记录。
Circulation. 2021 Dec 21;144(25):2004-2020. doi: 10.1161/CIRCULATIONAHA.121.055417. Epub 2021 Nov 19.
2
Cell proliferation fate mapping reveals regional cardiomyocyte cell-cycle activity in subendocardial muscle of left ventricle.细胞增殖命运图谱揭示左心室心内膜下心肌的区域性心肌细胞周期活性。
Nat Commun. 2021 Oct 1;12(1):5784. doi: 10.1038/s41467-021-25933-5.
3
In the zone for liver proliferation.
在肝脏增殖区域。
Science. 2021 Feb 26;371(6532):887-888. doi: 10.1126/science.abg4864.
4
Proliferation tracing reveals regional hepatocyte generation in liver homeostasis and repair.增殖示踪揭示了肝内稳态和修复中的区域性肝细胞生成。
Science. 2021 Feb 26;371(6532). doi: 10.1126/science.abc4346.
5
A suite of new Dre recombinase drivers markedly expands the ability to perform intersectional genetic targeting.一套新的 Dre 重组酶驱动明显扩展了进行交叉遗传靶向的能力。
Cell Stem Cell. 2021 Jun 3;28(6):1160-1176.e7. doi: 10.1016/j.stem.2021.01.007. Epub 2021 Feb 9.
6
Evaluating the Genotoxic and Cytotoxic Effects of Thymidine Analogs, 5-Ethynyl-2'-Deoxyuridine and 5-Bromo-2'-Deoxyurdine to Mammalian Cells.评估胸苷类似物 5-乙炔基-2'-脱氧尿苷和 5-溴-2'-脱氧尿苷对哺乳动物细胞的遗传毒性和细胞毒性作用。
Int J Mol Sci. 2020 Sep 10;21(18):6631. doi: 10.3390/ijms21186631.
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Genetic Fate Mapping of Transient Cell Fate Reveals N-Cadherin Activity and Function in Tumor Metastasis.瞬时细胞命运遗传命运图谱揭示 N-钙黏蛋白在肿瘤转移中的活性和功能。
Dev Cell. 2020 Sep 14;54(5):593-607.e5. doi: 10.1016/j.devcel.2020.06.021. Epub 2020 Jul 14.
8
Genetic lineage tracing with multiple DNA recombinases: A user's guide for conducting more precise cell fate mapping studies.利用多种 DNA 重组酶进行遗传谱系追踪:更精确地进行细胞命运图谱研究的用户指南。
J Biol Chem. 2020 May 8;295(19):6413-6424. doi: 10.1074/jbc.REV120.011631. Epub 2020 Mar 25.
9
AXIN2 Pericentral Hepatocytes Have Limited Contributions to Liver Homeostasis and Regeneration.AXIN2 中央周围肝细胞对肝脏稳态和再生的贡献有限。
Cell Stem Cell. 2020 Jan 2;26(1):97-107.e6. doi: 10.1016/j.stem.2019.10.011. Epub 2019 Dec 19.
10
Broad Distribution of Hepatocyte Proliferation in Liver Homeostasis and Regeneration.肝细胞增殖在肝脏稳态和再生中的广泛分布。
Cell Stem Cell. 2020 Jan 2;26(1):27-33.e4. doi: 10.1016/j.stem.2019.11.001. Epub 2019 Dec 19.