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用于古巴输入性 COVID-19 病例和 COVID-19 死亡人数的多变量时空模型。

A multivariate spatio-temporal model for the incidence of imported COVID-19 cases and COVID-19 deaths in Cuba.

机构信息

L-BioStat, KU Leuven, Leuven, 3000, Belgium.

L-BioStat, KU Leuven, Leuven, 3000, Belgium; I-BioStat, Hasselt University, Diepenbeek, 3590, Belgium.

出版信息

Spat Spatiotemporal Epidemiol. 2023 Jun;45:100588. doi: 10.1016/j.sste.2023.100588. Epub 2023 May 10.

DOI:10.1016/j.sste.2023.100588
PMID:37301587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10170878/
Abstract

To monitor the COVID-19 epidemic in Cuba, data on several epidemiological indicators have been collected on a daily basis for each municipality. Studying the spatio-temporal dynamics in these indicators, and how they behave similarly, can help us better understand how COVID-19 spread across Cuba. Therefore, spatio-temporal models can be used to analyze these indicators. Univariate spatio-temporal models have been thoroughly studied, but when interest lies in studying the association between multiple outcomes, a joint model that allows for association between the spatial and temporal patterns is necessary. The purpose of our study was to develop a multivariate spatio-temporal model to study the association between the weekly number of COVID-19 deaths and the weekly number of imported COVID-19 cases in Cuba during 2021. To allow for correlation between the spatial patterns, a multivariate conditional autoregressive prior (MCAR) was used. Correlation between the temporal patterns was taken into account by using two approaches; either a multivariate random walk prior was used or a multivariate conditional autoregressive prior (MCAR) was used. All models were fitted within a Bayesian framework.

摘要

为了监测古巴的 COVID-19 疫情,每天都在每个直辖市收集有关几个流行病学指标的数据。研究这些指标的时空动态及其相似的行为方式,可以帮助我们更好地了解 COVID-19 在古巴的传播情况。因此,可以使用时空模型来分析这些指标。已经对单变量时空模型进行了深入研究,但是当研究兴趣在于研究多个结果之间的关联时,就需要使用允许空间和时间模式之间存在关联的联合模型。我们研究的目的是开发一个多变量时空模型,以研究 2021 年古巴每周 COVID-19 死亡人数与每周输入 COVID-19 病例数之间的关联。为了允许空间模式之间存在相关性,使用了多变量条件自回归先验(MCAR)。通过使用两种方法考虑时间模式之间的相关性;使用多元随机游走先验或多变量条件自回归先验(MCAR)。所有模型均在贝叶斯框架内进行拟合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/d7e263b60508/gr8_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/c3101f39688f/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/2334a71dfeef/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/cb64991971ee/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/5ad552a42390/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/00455758131c/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/b75d9bf992a4/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/ad5dad0357d9/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/d7e263b60508/gr8_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/c3101f39688f/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/2334a71dfeef/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/cb64991971ee/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/5ad552a42390/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/00455758131c/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/b75d9bf992a4/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/ad5dad0357d9/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa6d/10170878/d7e263b60508/gr8_lrg.jpg

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Cuban Abdala vaccine: Effectiveness in preventing severe disease and death from COVID-19 in Havana, Cuba; A cohort study.古巴阿卜杜拉疫苗:在古巴哈瓦那预防新冠病毒病严重疾病和死亡方面的有效性;一项队列研究。
Lancet Reg Health Am. 2022 Dec;16:100366. doi: 10.1016/j.lana.2022.100366. Epub 2022 Sep 24.
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Emergence and evolution of SARS-CoV-2 genetic variants during the Cuban epidemic.古巴疫情期间严重急性呼吸综合征冠状病毒2(SARS-CoV-2)基因变体的出现与演变
J Clin Virol Plus. 2022 Nov;2(4):100104. doi: 10.1016/j.jcvp.2022.100104. Epub 2022 Aug 22.
3
Multivariate Bayesian spatio-temporal P-spline models to analyze crimes against women.
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4
Equity and the Cuban National Health System's response to COVID-19.公平性与古巴国家卫生系统对新冠疫情的应对措施
Rev Panam Salud Publica. 2021 Jul 1;45:e80. doi: 10.26633/RPSP.2021.80. eCollection 2021.
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Bayesian spatio-temporal joint disease mapping of Covid-19 cases and deaths in local authorities of England.英格兰地方当局新冠疫情病例及死亡情况的贝叶斯时空联合疾病映射分析
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