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甜菜中WD40蛋白家族的全基因组分析及功能鉴定

Genome-wide analysis of WD40 protein family and functional characterization of in sugar beet.

作者信息

Wu Zhirui, Zhang Tingyue, Li Jinna, Chen Sixue, Grin Inga R, Zharkov Dmitry O, Yu Bing, Li Haiying

机构信息

Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Plant Genetic Engineering and Biological Fermentation Engineering for Cold Region & Key Laboratory of Molecular Biology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin, China.

Department of Biology, University of Mississippi, Oxford, MS, United States.

出版信息

Front Plant Sci. 2023 Jun 2;14:1185440. doi: 10.3389/fpls.2023.1185440. eCollection 2023.

Abstract

Sugar beet is one of the most important sugar crops in the world. It contributes greatly to the global sugar production, but salt stress negatively affects the crop yield. WD40 proteins play important roles in plant growth and response to abiotic stresses through their involvement in a variety of biological processes, such as signal transduction, histone modification, ubiquitination, and RNA processing. The WD40 protein family has been well-studied in , rice and other plants, but the systematic analysis of the sugar beet WD40 proteins has not been reported. In this study, a total of 177 WD40 proteins were identified from the sugar beet genome, and their evolutionary characteristics, protein structure, gene structure, protein interaction network and gene ontology were systematically analyzed to understand their evolution and function. Meanwhile, the expression patterns of under salt stress were characterized, and a gene was hypothesized as a salt-tolerant candidate gene. Its function was further characterized using molecular and genetic methods. The result showed that enhanced salt stress tolerance in transgenic seedlings by increasing the contents of osmolytes and antioxidant enzyme activities, maintaining intracellular ion homeostasis and increasing the expression of genes related to SOS and ABA pathways. The result has laid a foundation for further mechanistic study of the genes in sugar beet tolerance to salt stress, and it may inform biotechnological applications in improving crop stress resilience.

摘要

甜菜是世界上最重要的糖料作物之一。它对全球食糖生产贡献巨大,但盐胁迫会对作物产量产生负面影响。WD40蛋白通过参与多种生物过程,如信号转导、组蛋白修饰、泛素化和RNA加工,在植物生长和对非生物胁迫的响应中发挥重要作用。WD40蛋白家族在拟南芥、水稻和其他植物中已得到充分研究,但尚未见对甜菜WD40蛋白的系统分析报道。本研究从甜菜基因组中鉴定出总共177个WD40蛋白,并对其进化特征、蛋白质结构、基因结构、蛋白质相互作用网络和基因本体进行了系统分析,以了解它们的进化和功能。同时,对盐胁迫下BvWD40基因的表达模式进行了表征,并推测一个BvWD40基因是耐盐候选基因。利用分子和遗传方法进一步对其功能进行了表征。结果表明,BvWD40通过增加渗透调节物质含量和抗氧化酶活性、维持细胞内离子稳态以及增加与SOS和ABA途径相关基因的表达,增强了转基因拟南芥幼苗的耐盐胁迫能力。该结果为进一步深入研究甜菜中BvWD40基因耐盐胁迫的机制奠定了基础,并且可能为生物技术在提高作物抗逆性方面的应用提供参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ef2/10272600/71d5f5e1f7af/fpls-14-1185440-g001.jpg

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