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使用基于多尺度深度学习的去噪算法从无标记双光子宫颈组织图像中恢复代谢功能指标。

Restoration of metabolic functional metrics from label-free, two-photon cervical tissue images using multiscale deep-learning-based denoising algorithms.

作者信息

Vora Nilay, Polleys Christopher M, Sakellariou Filippos, Georgalis Georgios, Thieu Hong-Thao, Genega Elizabeth M, Jahanseir Narges, Patra Abani, Miller Eric, Georgakoudi Irene

机构信息

Department of Biomedical Engineering, Tufts University, Medford, MA 02155, USA.

Anatolia College, Thessaloniki, Greece.

出版信息

bioRxiv. 2023 Jun 9:2023.06.07.544033. doi: 10.1101/2023.06.07.544033.

DOI:10.1101/2023.06.07.544033
PMID:37333366
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10274804/
Abstract

Label-free, two-photon imaging captures morphological and functional metabolic tissue changes and enables enhanced understanding of numerous diseases. However, this modality suffers from low signal arising from limitations imposed by the maximum permissible dose of illumination and the need for rapid image acquisition to avoid motion artifacts. Recently, deep learning methods have been developed to facilitate the extraction of quantitative information from such images. Here, we employ deep neural architectures in the synthesis of a multiscale denoising algorithm optimized for restoring metrics of metabolic activity from low-SNR, two-photon images. Two-photon excited fluorescence (TPEF) images of reduced nicotinamide adenine dinucleotide (phosphate) (NAD(P)H) and flavoproteins (FAD) from freshly excised human cervical tissues are used. We assess the impact of the specific denoising model, loss function, data transformation, and training dataset on established metrics of image restoration when comparing denoised single frame images with corresponding six frame averages, considered as the ground truth. We further assess the restoration accuracy of six metrics of metabolic function from the denoised images relative to ground truth images. Using a novel algorithm based on deep denoising in the wavelet transform domain, we demonstrate optimal recovery of metabolic function metrics. Our results highlight the promise of denoising algorithms to recover diagnostically useful information from low SNR label-free two-photon images and their potential importance in the clinical translation of such imaging.

摘要

无标记双光子成像可捕捉形态学和功能性代谢组织变化,有助于更深入地了解多种疾病。然而,由于光照最大允许剂量的限制以及为避免运动伪影而需要快速图像采集,这种成像方式存在信号低的问题。最近,深度学习方法已被开发出来,以促进从此类图像中提取定量信息。在此,我们采用深度神经网络架构合成一种多尺度去噪算法,该算法经过优化,可从低信噪比的双光子图像中恢复代谢活性指标。我们使用了来自新鲜切除的人宫颈组织的还原型烟酰胺腺嘌呤二核苷酸(磷酸)(NAD(P)H)和黄素蛋白(FAD)的双光子激发荧光(TPEF)图像。在将去噪后的单帧图像与相应的六帧平均值(视为真实值)进行比较时,我们评估了特定去噪模型、损失函数、数据变换和训练数据集对既定图像恢复指标的影响。我们还进一步评估了去噪图像相对于真实图像的六个代谢功能指标的恢复准确性。通过使用基于小波变换域深度去噪的新颖算法,我们展示了代谢功能指标的最佳恢复效果。我们的结果突出了去噪算法从低信噪比无标记双光子图像中恢复诊断有用信息的前景及其在此类成像临床转化中的潜在重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/c35ab424967b/nihpp-2023.06.07.544033v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/73899ffe3f6a/nihpp-2023.06.07.544033v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/0b646bb8c216/nihpp-2023.06.07.544033v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/c183a5d554b3/nihpp-2023.06.07.544033v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/390a492dd022/nihpp-2023.06.07.544033v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/ab9a4a85405f/nihpp-2023.06.07.544033v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/c35ab424967b/nihpp-2023.06.07.544033v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/73899ffe3f6a/nihpp-2023.06.07.544033v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/0b646bb8c216/nihpp-2023.06.07.544033v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/c183a5d554b3/nihpp-2023.06.07.544033v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/390a492dd022/nihpp-2023.06.07.544033v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/ab9a4a85405f/nihpp-2023.06.07.544033v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8064/10274804/c35ab424967b/nihpp-2023.06.07.544033v1-f0006.jpg

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