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端粒 DNA 序列和长度的鉴定。

Identification of the Sequence and the Length of Telomere DNA.

机构信息

Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.

National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic.

出版信息

Methods Mol Biol. 2023;2672:285-302. doi: 10.1007/978-1-0716-3226-0_18.

DOI:10.1007/978-1-0716-3226-0_18
PMID:37335484
Abstract

Telomeres are essential nucleoprotein structures at the very ends of linear eukaryote chromosomes. They shelter the terminal genome territories against degradation and prevent the natural chromosome ends from being recognized by repair mechanisms as double-strand DNA breaks.There are two basic characteristics of telomeric DNA, its sequence and its length. The telomere sequence is important as a "landing area" for specific telomere-binding proteins, which function as signals and moderate the interactions required for correct telomere function. While the sequence forms the proper "landing surface" of telomeric DNA, its length is similarly important. Too short or exceptionally long telomere DNA cannot perform its function properly. In this chapter, methods for the investigation of these two basic telomere DNA characteristics are described, namely, telomere motif identification and telomere length measurement.

摘要

端粒是线性真核生物染色体末端的重要核蛋白结构。它们保护末端基因组区域免受降解,并防止自然染色体末端被修复机制识别为双链 DNA 断裂。端粒 DNA 有两个基本特征,即其序列和长度。端粒序列作为特定端粒结合蛋白的“着陆区”很重要,这些蛋白作为信号,调节正确端粒功能所需的相互作用。虽然序列形成了端粒 DNA 的适当“着陆表面”,但其长度同样重要。过短或异常长的端粒 DNA 无法正常发挥其功能。本章描述了研究这两个基本端粒 DNA 特征的方法,即端粒基序识别和端粒长度测量。

相似文献

1
Identification of the Sequence and the Length of Telomere DNA.端粒 DNA 序列和长度的鉴定。
Methods Mol Biol. 2023;2672:285-302. doi: 10.1007/978-1-0716-3226-0_18.
2
DNA damage processing at telomeres: The ends justify the means.端粒处的DNA损伤处理:结果证明手段合理。
DNA Repair (Amst). 2016 Aug;44:159-168. doi: 10.1016/j.dnarep.2016.05.022. Epub 2016 May 16.
3
Fanconi anemia proteins in telomere maintenance.范可尼贫血蛋白在端粒维持中的作用
DNA Repair (Amst). 2016 Jul;43:107-12. doi: 10.1016/j.dnarep.2016.02.007. Epub 2016 Apr 8.
4
Ku Binding on Telomeres Occurs at Sites Distal from the Physical Chromosome Ends.端粒上的Ku结合发生在远离物理染色体末端的位点。
PLoS Genet. 2016 Dec 8;12(12):e1006479. doi: 10.1371/journal.pgen.1006479. eCollection 2016 Dec.
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The regulation of the DNA damage response at telomeres: focus on kinases.端粒处DNA损伤反应的调控:聚焦于激酶
Biochem Soc Trans. 2021 Apr 30;49(2):933-943. doi: 10.1042/BST20200856.
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Telomere repeat binding factors: keeping the ends in check.端粒重复序列结合因子:维持染色体末端稳定
Cancer Lett. 2003 May 15;194(2):189-97. doi: 10.1016/s0304-3835(02)00706-1.
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Telomeres and double-strand breaks - all's well that "ends" well. ..端粒与双链断裂——结局好一切都好。
Radiat Res. 2008 Jan;169(1):1-7. doi: 10.1667/RR1197.1.
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NHEJ Contributes to the Fast Repair of Radiation-induced DNA Double-strand Breaks at Late Prophase I Telomeres.非同源末端连接有助于在减数第一次分裂前期晚期的端粒处快速修复辐射诱导的DNA双链断裂。
Health Phys. 2018 Jul;115(1):102-107. doi: 10.1097/HP.0000000000000852.
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The Response to DNA Damage at Telomeric Repeats and Its Consequences for Telomere Function.端粒重复处的 DNA 损伤反应及其对端粒功能的影响。
Genes (Basel). 2019 Apr 24;10(4):318. doi: 10.3390/genes10040318.
10
Telomeric nucleosomes: forgotten players at chromosome ends.端粒核小体:染色体末端被遗忘的参与者。
Cell Mol Life Sci. 2008 Nov;65(22):3553-63. doi: 10.1007/s00018-008-8307-8.

本文引用的文献

1
Evolution of plant telomerase RNAs: farther to the past, deeper to the roots.植物端粒酶 RNA 的进化:追溯到更早的过去,扎根于更深处。
Nucleic Acids Res. 2021 Jul 21;49(13):7680-7694. doi: 10.1093/nar/gkab545.
2
Extraordinary diversity of telomeres, telomerase RNAs and their template regions in Saccharomycetaceae.酿酒酵母科中端粒、端粒酶 RNA 及其模板区的非凡多样性。
Sci Rep. 2021 Jun 17;11(1):12784. doi: 10.1038/s41598-021-92126-x.
3
Shaping human telomeres: from shelterin and CST complexes to telomeric chromatin organization.
塑造人类端粒:从端粒保护蛋白和 CST 复合物到端粒染色质结构。
Nat Rev Mol Cell Biol. 2021 Apr;22(4):283-298. doi: 10.1038/s41580-021-00328-y. Epub 2021 Feb 9.
4
Step-by-Step Evolution of Telomeres: Lessons from Yeasts.端粒的逐步进化:来自酵母菌的启示。
Genome Biol Evol. 2021 Feb 3;13(2). doi: 10.1093/gbe/evaa268.
5
Method comparison studies of telomere length measurement using qPCR approaches: A critical appraisal of the literature.qPCR 方法测量端粒长度的方法比较研究:文献评价。
PLoS One. 2021 Jan 20;16(1):e0245582. doi: 10.1371/journal.pone.0245582. eCollection 2021.
6
Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences.海草中类似人类的端粒揭示了从植物端粒序列向人类端粒序列的转变模式。
J Exp Bot. 2020 Oct 7;71(19):5786-5793. doi: 10.1093/jxb/eraa293.
7
Origin, Diversity, and Evolution of Telomere Sequences in Plants.植物端粒序列的起源、多样性及进化
Front Plant Sci. 2020 Feb 21;11:117. doi: 10.3389/fpls.2020.00117. eCollection 2020.
8
Two combinatorial patterns of telomere histone marks in plants with canonical and non-canonical telomere repeats.两种组合的端粒组蛋白标记模式在具有典型和非典型端粒重复的植物中。
Plant J. 2020 May;102(4):678-687. doi: 10.1111/tpj.14653. Epub 2020 Jan 13.
9
Telomerase RNAs in land plants.陆地植物中的端粒酶 RNA。
Nucleic Acids Res. 2019 Oct 10;47(18):9842-9856. doi: 10.1093/nar/gkz695.
10
Telomeres in Plants and Humans: Not So Different, Not So Similar.植物和人类的端粒:不尽相同,也不尽相似。
Cells. 2019 Jan 16;8(1):58. doi: 10.3390/cells8010058.