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Democratizing knowledge representation with BioCypher.

作者信息

Lobentanzer Sebastian, Aloy Patrick, Baumbach Jan, Bohar Balazs, Carey Vincent J, Charoentong Pornpimol, Danhauser Katharina, Doğan Tunca, Dreo Johann, Dunham Ian, Farr Elias, Fernandez-Torras Adrià, Gyori Benjamin M, Hartung Michael, Hoyt Charles Tapley, Klein Christoph, Korcsmaros Tamas, Maier Andreas, Mann Matthias, Ochoa David, Pareja-Lorente Elena, Popp Ferdinand, Preusse Martin, Probul Niklas, Schwikowski Benno, Sen Bünyamin, Strauss Maximilian T, Turei Denes, Ulusoy Erva, Waltemath Dagmar, Wodke Judith A H, Saez-Rodriguez Julio

机构信息

Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany.

Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Spain.

出版信息

Nat Biotechnol. 2023 Aug;41(8):1056-1059. doi: 10.1038/s41587-023-01848-y.

DOI:10.1038/s41587-023-01848-y

PMID:37337100

Abstract

摘要

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The FAIR Guiding Principles for scientific data management and stewardship.

Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18.

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.

J Biomed Inform. 2011 Feb;44(1):137-45. doi: 10.1016/j.jbi.2010.10.003. Epub 2010 Oct 16.

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Democratizing knowledge representation with BioCypher.

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