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先驱转录因子在直接细胞重编程诱导中的作用。

The role of pioneer transcription factors in the induction of direct cellular reprogramming.

作者信息

Horisawa Kenichi, Suzuki Atsushi

机构信息

Division of Organogenesis and Regeneration, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.

出版信息

Regen Ther. 2023 Jun 19;24:112-116. doi: 10.1016/j.reth.2023.06.002. eCollection 2023 Dec.

DOI:10.1016/j.reth.2023.06.002
PMID:37397229
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10314230/
Abstract

Regenerative medicine is a highly advanced medical field that aims to restore tissues and organs lost due to diseases and injury using a person's own cells or those of others. Direct cellular reprogramming is a promising technology that can directly induce cell-fate conversion from terminally differentiated cells to other cell types and is expected to play a pivotal role in applications in regenerative medicine. The induction of direct cellular reprogramming requires one or more master transcription factors with the potential to reconstitute cell type-specific transcription factor networks. The set of master transcription factors may contain unique transcription factors called pioneer factors that can open compacted chromatin structures and drive the transcriptional activation of target genes. Therefore, pioneer factors may play a central role in direct cellular reprogramming. However, our understanding of the molecular mechanisms by which pioneer factors induce cell-fate conversion is still limited. This review briefly summarizes the outcomes of recent findings and discusses future perspectives, focusing on the role of pioneer factors in direct cellular reprogramming.

摘要

再生医学是一个高度先进的医学领域,旨在利用一个人自身的细胞或他人的细胞来恢复因疾病和损伤而丧失的组织和器官。直接细胞重编程是一项很有前景的技术,它可以直接诱导终末分化细胞向其他细胞类型的细胞命运转变,并有望在再生医学应用中发挥关键作用。直接细胞重编程的诱导需要一种或多种具有重构细胞类型特异性转录因子网络潜力的主转录因子。主转录因子组可能包含称为先驱因子的独特转录因子,这些先驱因子可以打开紧密的染色质结构并驱动靶基因的转录激活。因此,先驱因子可能在直接细胞重编程中发挥核心作用。然而,我们对先驱因子诱导细胞命运转变的分子机制的理解仍然有限。本综述简要总结了近期研究结果,并讨论了未来展望,重点关注先驱因子在直接细胞重编程中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/fc087f3c5aeb/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/88c526d82535/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/58dadbbb0827/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/58ddce4b7338/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/fc087f3c5aeb/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/88c526d82535/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/58dadbbb0827/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/58ddce4b7338/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ae/10314230/fc087f3c5aeb/gr4.jpg

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本文引用的文献

1
A quantitative metric of pioneer activity reveals that HNF4A has stronger in vivo pioneer activity than FOXA1.一种先驱活性的定量指标表明,HNF4A 比 FOXA1 具有更强的体内先驱活性。
Genome Biol. 2022 Oct 17;23(1):221. doi: 10.1186/s13059-022-02792-x.
2
Cross-lineage potential of Ascl1 uncovered by comparing diverse reprogramming regulatomes.通过比较不同的重编程调控组,揭示了 Ascl1 的跨谱系潜力。
Cell Stem Cell. 2022 Oct 6;29(10):1491-1504.e9. doi: 10.1016/j.stem.2022.09.006.
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TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach.
Trends Pharmacol Sci. 2024 Jun;45(6):503-519. doi: 10.1016/j.tips.2024.04.012. Epub 2024 May 22.
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Sox2 and βIII-Tubulin as Biomarkers of Drug Resistance in Poorly Differentiated Sinonasal Carcinomas.Sox2和βIII-微管蛋白作为低分化鼻窦癌耐药性的生物标志物
J Pers Med. 2023 Oct 18;13(10):1504. doi: 10.3390/jpm13101504.
通过先驱因子导向的跨组学方法进行数据驱动的直接重编程。
Bioinformatics. 2022 May 13;38(10):2839-2846. doi: 10.1093/bioinformatics/btac209.
4
Pioneer factors as master regulators of the epigenome and cell fate.先驱因子作为表观基因组和细胞命运的主要调节因子。
Nat Rev Mol Cell Biol. 2022 Jul;23(7):449-464. doi: 10.1038/s41580-022-00464-z. Epub 2022 Mar 9.
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The control of transcriptional memory by stable mitotic bookmarking.通过稳定的有丝分裂书签控制转录记忆。
Nat Commun. 2022 Mar 4;13(1):1176. doi: 10.1038/s41467-022-28855-y.
6
Direct Conversion of Human Endothelial Cells Into Liver Cancer-Forming Cells Using Nonintegrative Episomal Vectors.利用非整合性附加体载体将人内皮细胞直接转化为肝癌形成细胞。
Hepatol Commun. 2022 Jul;6(7):1725-1740. doi: 10.1002/hep4.1911. Epub 2022 Feb 27.
7
A test of the pioneer factor hypothesis using ectopic liver gene activation.利用异位肝基因激活对先驱因子假说进行检验。
Elife. 2022 Jan 5;11:e73358. doi: 10.7554/eLife.73358.
8
Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors.增强子中的序列逻辑控制 FOXA 先驱因子诱导内胚层器官命运的双重机制。
Nat Commun. 2021 Nov 17;12(1):6636. doi: 10.1038/s41467-021-26950-0.
9
Direct cell reprogramming: approaches, mechanisms and progress.直接细胞重编程:方法、机制与进展。
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10
Suppression of canonical TGF-β signaling enables GATA4 to interact with H3K27me3 demethylase JMJD3 to promote cardiomyogenesis.抑制经典 TGF-β 信号通路使得 GATA4 能够与 H3K27me3 去甲基化酶 JMJD3 相互作用,从而促进心肌发生。
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