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三种从北极永久冻土中提取微生物DNA的方法的比较

Comparison of three DNA extraction methods for recovery of microbial DNA from Arctic permafrost.

作者信息

Feng Sarah, DeKlotz Marla, Taş Neslihan

机构信息

Lawrence Berkeley National Laboratory, Berkeley, California, United States.

出版信息

MicroPubl Biol. 2023 Jun 21;2023. doi: 10.17912/micropub.biology.000834. eCollection 2023.

Abstract

Permafrost soils, which contain one of Earth's largest terrestrial carbon stocks, are vulnerable to thaw and microbial decomposition, exacerbating climate change. Advancements in sequencing technologies have facilitated the identification and functional profiling of microbial communities in permafrost, but DNA extraction from these soils is challenging due to their high microbial diversity and low biomass. This study assessed the effectiveness of the DNeasy PowerSoil Pro kit in extracting DNA from permafrost samples and found that it produced significantly different results than the discontinued DNeasy PowerSoil kit. The study highlights the importance of consistent DNA extraction methods in permafrost studies.

摘要

永久冻土土壤含有地球上最大的陆地碳储量之一,容易解冻和微生物分解,从而加剧气候变化。测序技术的进步促进了对永久冻土中微生物群落的识别和功能分析,但从这些土壤中提取DNA具有挑战性,因为它们的微生物多样性高且生物量低。本研究评估了DNeasy PowerSoil Pro试剂盒从永久冻土样本中提取DNA的有效性,发现其结果与已停产的DNeasy PowerSoil试剂盒有显著差异。该研究强调了在永久冻土研究中采用一致的DNA提取方法的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0500/10320573/d0d069f62f65/25789430-2023-micropub.biology.000834.jpg

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