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基于非线性光学显微镜图像的衰老细胞分类的深度集成学习与迁移学习方法

Deep ensemble learning and transfer learning methods for classification of senescent cells from nonlinear optical microscopy images.

作者信息

Sorrentino Salvatore, Manetti Francesco, Bresci Arianna, Vernuccio Federico, Ceconello Chiara, Ghislanzoni Silvia, Bongarzone Italia, Vanna Renzo, Cerullo Giulio, Polli Dario

机构信息

Department of Physics, Politecnico di Milano, Milan, Italy.

Department of Advanced Diagnostics, Fondazione IRCCS Istituto Nazionale dei Tumori Milano, Milan, Italy.

出版信息

Front Chem. 2023 Jun 23;11:1213981. doi: 10.3389/fchem.2023.1213981. eCollection 2023.

DOI:10.3389/fchem.2023.1213981
PMID:37426334
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10326547/
Abstract

The success of chemotherapy and radiotherapy anti-cancer treatments can result in tumor suppression or senescence induction. Senescence was previously considered a favorable therapeutic outcome, until recent advancements in oncology research evidenced senescence as one of the culprits of cancer recurrence. Its detection requires multiple assays, and nonlinear optical (NLO) microscopy provides a solution for fast, non-invasive, and label-free detection of therapy-induced senescent cells. Here, we develop several deep learning architectures to perform binary classification between senescent and proliferating human cancer cells using NLO microscopy images and we compare their performances. As a result of our work, we demonstrate that the most performing approach is the one based on an ensemble classifier, that uses seven different pre-trained classification networks, taken from literature, with the addition of fully connected layers on top of their architectures. This approach achieves a classification accuracy of over 90%, showing the possibility of building an automatic, unbiased senescent cells image classifier starting from multimodal NLO microscopy data. Our results open the way to a deeper investigation of senescence classification via deep learning techniques with a potential application in clinical diagnosis.

摘要

化疗和放疗抗癌治疗的成功可能导致肿瘤抑制或诱导衰老。衰老以前被认为是一种良好的治疗结果,直到肿瘤学研究的最新进展证明衰老也是癌症复发的罪魁祸首之一。其检测需要多种检测方法,而非线性光学(NLO)显微镜为快速、非侵入性和无标记检测治疗诱导的衰老细胞提供了一种解决方案。在这里,我们开发了几种深度学习架构,使用NLO显微镜图像对衰老和增殖的人类癌细胞进行二元分类,并比较它们的性能。作为我们工作的结果,我们证明性能最佳的方法是基于集成分类器的方法,该方法使用了七个不同的预训练分类网络(取自文献),并在其架构之上添加了全连接层。这种方法实现了超过90%的分类准确率,表明从多模态NLO显微镜数据构建一个自动、无偏差的衰老细胞图像分类器是可能的。我们的结果为通过深度学习技术对衰老分类进行更深入的研究开辟了道路,并在临床诊断中具有潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/e9b142eb5f80/fchem-11-1213981-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/dcf321f97060/fchem-11-1213981-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/cd1f9658bf46/fchem-11-1213981-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/d03f00d86d31/fchem-11-1213981-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/3a2b76e604bd/fchem-11-1213981-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/3fe1bf5f4e4d/fchem-11-1213981-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/e9b142eb5f80/fchem-11-1213981-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/dcf321f97060/fchem-11-1213981-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/cd1f9658bf46/fchem-11-1213981-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/d03f00d86d31/fchem-11-1213981-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/3a2b76e604bd/fchem-11-1213981-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/3fe1bf5f4e4d/fchem-11-1213981-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/390c/10326547/e9b142eb5f80/fchem-11-1213981-g006.jpg

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Label-free multimodal nonlinear optical microscopy reveals features of bone composition in pathophysiological conditions.无标记多模态非线性光学显微镜揭示了病理生理条件下骨成分的特征。
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Deep Learning Techniques to Diagnose Lung Cancer.
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Protein and lipid mass concentration measurement in tissues by stimulated Raman scattering microscopy.利用受激拉曼散射显微镜测量组织中的蛋白质和脂质质量浓度。
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