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与前列腺癌健康差异相关的表观遗传机制改变

Alterations in the Epigenetic Machinery Associated with Prostate Cancer Health Disparities.

作者信息

Craddock Jenna, Jiang Jue, Patrick Sean M, Mutambirwa Shingai B A, Stricker Phillip D, Bornman M S Riana, Jaratlerdsiri Weerachai, Hayes Vanessa M

机构信息

School of Health Systems and Public Health, Faculty of Health Sciences, University of Pretoria, Pretoria 0084, South Africa.

Ancestry and Health Genomics Laboratory, Charles Perkins Centre, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW 2006, Australia.

出版信息

Cancers (Basel). 2023 Jul 1;15(13):3462. doi: 10.3390/cancers15133462.

Abstract

Prostate cancer is driven by acquired genetic alterations, including those impacting the epigenetic machinery. With African ancestry as a significant risk factor for aggressive disease, we hypothesize that dysregulation among the roughly 656 epigenetic genes may contribute to prostate cancer health disparities. Investigating prostate tumor genomic data from 109 men of southern African and 56 men of European Australian ancestry, we found that African-derived tumors present with a longer tail of epigenetic driver gene candidates (72 versus 10). Biased towards African-specific drivers (63 versus 9 shared), many are novel to prostate cancer (18/63), including several putative therapeutic targets (, , , , , and ). Through clustering of all variant types and copy number alterations, we describe two epigenetic PCa taxonomies capable of differentiating patients by ancestry and predicted clinical outcomes. We identified the top genes in African- and European-derived tumors representing a multifunctional "generic machinery", the alteration of which may be instrumental in epigenetic dysregulation and prostate tumorigenesis. In conclusion, numerous somatic alterations in the epigenetic machinery drive prostate carcinogenesis, but African-derived tumors appear to achieve this state with greater diversity among such alterations. The greater novelty observed in African-derived tumors illustrates the significant clinical benefit to be derived from a much needed African-tailored approach to prostate cancer healthcare aimed at reducing prostate cancer health disparities.

摘要

前列腺癌是由获得性基因改变驱动的,包括那些影响表观遗传机制的改变。非洲血统是侵袭性疾病的一个重要风险因素,我们推测大约656个表观遗传基因中的失调可能导致前列腺癌的健康差异。通过研究来自109名南非男性和56名欧洲裔澳大利亚男性的前列腺肿瘤基因组数据,我们发现源自非洲的肿瘤呈现出更长的表观遗传驱动基因候选序列(分别为72个和10个)。这些候选基因偏向于非洲特异性驱动基因(分别为63个和9个共享基因),其中许多是前列腺癌中的新基因(63个中有18个),包括几个假定的治疗靶点(……)。通过对所有变异类型和拷贝数改变进行聚类分析,我们描述了两种表观遗传前列腺癌分类法,它们能够根据血统和预测的临床结果区分患者。我们确定了源自非洲和欧洲的肿瘤中的关键基因,这些基因代表了一种多功能的“通用机制”,其改变可能在表观遗传失调和前列腺肿瘤发生中起作用。总之,表观遗传机制中的大量体细胞改变驱动前列腺癌发生,但源自非洲的肿瘤似乎通过此类改变中更大的多样性达到这种状态。在源自非洲的肿瘤中观察到的更多新基因表明,针对前列腺癌医疗保健采取急需的非洲定制方法以减少前列腺癌健康差异将带来显著的临床益处。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e8a/10341375/618cf8a31b6a/cancers-15-03462-g001a.jpg

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