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揭示具有短 C 末端序列的特殊真菌 LPMO 家族成员,该序列类似于磷酸盐结合基序。

Insights into peculiar fungal LPMO family members holding a short C-terminal sequence reminiscent of phosphate binding motifs.

机构信息

UMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, 13009, Marseille, France.

IFP Energies nouvelles, 1 et 4 avenue de Bois-Préau, 92852, Rueil-Malmaison, France.

出版信息

Sci Rep. 2023 Jul 18;13(1):11586. doi: 10.1038/s41598-023-38617-5.

Abstract

Lytic polysaccharide monooxygenases (LPMOs) are taxonomically widespread copper-enzymes boosting biopolymers conversion (e.g. cellulose, chitin) in Nature. White-rot Polyporales, which are major fungal wood decayers, may possess up to 60 LPMO-encoding genes belonging to the auxiliary activities family 9 (AA9). Yet, the functional relevance of such multiplicity remains to be uncovered. Previous comparative transcriptomic studies of six Polyporales fungi grown on cellulosic substrates had shown the overexpression of numerous AA9-encoding genes, including some holding a C-terminal domain of unknown function ("X282"). Here, after carrying out structural predictions and phylogenetic analyses, we selected and characterized six AA9-X282s with different C-term modularities and atypical features hitherto unreported. Unexpectedly, after screening a large array of conditions, these AA9-X282s showed only weak binding properties to cellulose, and low to no cellulolytic oxidative activity. Strikingly, proteomic analysis revealed the presence of multiple phosphorylated residues at the surface of these AA9-X282s, including a conserved residue next to the copper site. Further analyses focusing on a 9 residues glycine-rich C-term extension suggested that it could hold phosphate-binding properties. Our results question the involvement of these AA9 proteins in the degradation of plant cell wall and open new avenues as to the divergence of function of some AA9 members.

摘要

溶细胞多糖单加氧酶(LPMOs)是一种在自然界中广泛存在的铜酶,可以促进生物聚合物(如纤维素、几丁质)的转化。白腐菌(Polyporales)是主要的真菌木材分解者,可能拥有多达 60 种属于辅助活性家族 9(AA9)的 LPMO 编码基因。然而,这种多样性的功能相关性仍有待揭示。以前对六种在纤维素底物上生长的 Polyporales 真菌进行的比较转录组学研究表明,大量 AA9 编码基因的表达上调,其中一些基因具有未知功能的 C 端结构域("X282")。在这里,我们进行了结构预测和系统发育分析,选择并表征了六个具有不同 C 端模块性和迄今未报道的非典型特征的 AA9-X282。出乎意料的是,在筛选了大量条件后,这些 AA9-X282 对纤维素的结合能力较弱,且具有较低或没有纤维素氧化活性。引人注目的是,蛋白质组学分析显示这些 AA9-X282 的表面存在多个磷酸化残基,包括铜结合位点附近的一个保守残基。进一步的分析集中在一个由 9 个富含甘氨酸的 C 端延伸的残基上,表明它可能具有结合磷酸的特性。我们的结果质疑了这些 AA9 蛋白在植物细胞壁降解中的作用,并为一些 AA9 成员功能的分化开辟了新的途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d8c/10354095/88e912e73371/41598_2023_38617_Fig1_HTML.jpg

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