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基于机器学习算法的铜死亡相关风险评分可预测头颈部鳞状细胞癌的预后并描绘肿瘤微环境特征。

Cuproptosis-related risk score based on machine learning algorithm predicts prognosis and characterizes tumor microenvironment in head and neck squamous carcinomas.

机构信息

Medical Cosmetic Center, First Affiliated Hospital of Shantou University Medical College, Shantou, 515041, Guangdong, People's Republic of China.

Shantou University Medical College, Shantou, 515041, Guangdong, People's Republic of China.

出版信息

Sci Rep. 2023 Jul 22;13(1):11870. doi: 10.1038/s41598-023-38060-6.

Abstract

Cuproptosis is a recently discovered type of programmed cell death that shows significant potential in the diagnosis and treatment of cancer. It has important significance in the prognosis of HSNC. This study aims to construct a cuproptosis-related prognostic model and risk score through new data analysis methods such as machine learning algorithms for the prognosis analysis of HSNC. Protein-protein interaction network and machine learning methods were employed to identify hub genes that were used to construct a TreeGradientBoosting model for predicting overall survival. The relationship between the risk scores obtained from the model and features such as tumor microenvironment (TME) and tumor immunity was explored. The C-indexes of the TreeGradientBoosting model in the training and validation cohorts were 0.776 and 0.848, respectively. The nomogram based on risk scores and clinical features showed good performance, and distinguished the TME and immunity between high-risk and low-risk groups. The cuproptosis-associated risk score can be used to predict prognoses, TME, and tumor immunity of HNSC patients.

摘要

铜死亡是一种新发现的细胞程序性死亡方式,在癌症的诊断和治疗方面具有重要意义。它对 HSNC 的预后具有重要意义。本研究旨在通过机器学习算法等新数据分析方法,构建铜死亡相关的预后模型和风险评分,用于 HSNC 的预后分析。采用蛋白质-蛋白质相互作用网络和机器学习方法识别关键基因,构建 TreeGradientBoosting 模型预测总生存期。探讨模型获得的风险评分与肿瘤微环境(TME)和肿瘤免疫等特征之间的关系。TreeGradientBoosting 模型在训练和验证队列中的 C 指数分别为 0.776 和 0.848。基于风险评分和临床特征的列线图表现出良好的性能,区分了高危和低危组的 TME 和免疫。铜死亡相关的风险评分可用于预测 HNSC 患者的预后、TME 和肿瘤免疫。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8ab/10363129/1ff087ae34b6/41598_2023_38060_Fig1_HTML.jpg

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