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Cuproptosis-Related lncRNAs are Biomarkers of Prognosis and Immune Microenvironment in Head and Neck Squamous Cell Carcinoma.

作者信息

Yang Liuqing, Yu Jinling, Tao Lu, Huang Handan, Gao Ying, Yao Jingjing, Liu Zhihui

机构信息

Department of Prosthodontics, Hospital of Stomatology, Jilin University, Changchun, China.

出版信息

Front Genet. 2022 Jul 22;13:947551. doi: 10.3389/fgene.2022.947551. eCollection 2022.


DOI:10.3389/fgene.2022.947551
PMID:35938003
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9354258/
Abstract

Cuproptosis is a new type of cell death that induces protein toxic stress and eventually leads to cell death. Hence, regulating cuproptosis in tumor cells is a new therapeutic approach. However, studies on cuproptosis-related long noncoding RNA (lncRNA) in head and neck squamous cell carcinoma (HNSC) have not been found. This study aimed to explore the cuproptosis-related lncRNAs prognostic marker and their relationship to immune microenvironment in HNSC by using bioinformatics methods. RNA sequencing, genomic mutations, and clinical data of TCGA_HNSC were downloaded from The Cancer Genome Atlas. HNSC patients were randomly assigned to either a training group or a validation cohort. The least absolute shrinkage and selection operator Cox regression and multivariate Cox regression models were used to determine the prognostic model in the training cohort, and its independent prognostic effect was further confirmed in the validation and entire cohorts. Based on previous literature, we collected 19 genes associated with cuproptosis. Afterward, 783 cuproptosis-related lncRNAs were obtained through coexpression. Cox model revealed and constructed eight cuproptosis-related lncRNAs prognostic marker (AL132800.1, AC090587.1, AC079160.1, AC011462.4, AL157888.1, GRHL3-AS1, SNHG16, and AC021148.2). Patients were divided into high- and low-risk groups based on the median risk score. The Kaplan-Meier survival curve revealed that the overall survival between the high- and low-risk groups was statistically significant. The receiver operating characteristic curve and principal component analysis demonstrated the accurate prognostic ability of the model. Univariate and multivariate Cox regression analysis showed that risk score was an independent prognostic factor. In addition, we used multivariate Cox regression to establish a nomogram of the predictive power of prognostic markers. The tumor mutation burden showed significant differences between the high- and low-risk groups. HNSC patients in the high-risk group responded better to immunotherapy than those in the low-risk group. We also found that risk scores were significantly associated with drug sensitivity in HNSC. In summary, our study identified eight cuprotosis-related lncRNAs signature of HNSC as the prognostic predictor, which may be promising biomarkers for predicting the benefit of HNSC immunotherapy as well as drug sensitivity.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/572a00886de2/fgene-13-947551-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/c9ce2c833038/fgene-13-947551-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/164734a3c861/fgene-13-947551-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/1f63ac822a50/fgene-13-947551-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/7c4166f105c0/fgene-13-947551-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/96d9705984d4/fgene-13-947551-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/d193ef04628f/fgene-13-947551-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/1b1e00c64a46/fgene-13-947551-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/572a00886de2/fgene-13-947551-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/c9ce2c833038/fgene-13-947551-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/164734a3c861/fgene-13-947551-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/1f63ac822a50/fgene-13-947551-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/7c4166f105c0/fgene-13-947551-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/96d9705984d4/fgene-13-947551-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/d193ef04628f/fgene-13-947551-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/1b1e00c64a46/fgene-13-947551-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e9/9354258/572a00886de2/fgene-13-947551-g008.jpg

相似文献

[1]
Cuproptosis-Related lncRNAs are Biomarkers of Prognosis and Immune Microenvironment in Head and Neck Squamous Cell Carcinoma.

Front Genet. 2022-7-22

[2]
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[3]
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[4]
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[5]
The prognostic value and immune landscape of a cuproptosis-related lncRNA signature in head and neck squamous cell carcinoma.

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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Systematic analysis identifies CDKN2A as a prognostic biomarker for hepatocellular carcinoma.

Discov Oncol. 2025-8-30

[2]
Single-cell RNA sequencing and traditional RNA sequencing reveals the role of cancer-associated fibroblasts in head and neck squamous cell carcinomas cohort.

Discov Oncol. 2025-5-23

[3]
Predictive model for prognosis, immune microenvironment and drug sensitivity of colon carcinoma based on cuproptosis-related genes.

Int J Clin Exp Pathol. 2025-4-15

[4]
Lidocaine could promote the cuproptosis through up-regulating the long noncoding RNA DNMBP-AS1 in Hep-2 cells.

BMC Cancer. 2025-1-22

[5]
Integrated analysis of single-cell, spatial and bulk RNA-sequencing identifies a cell-death signature for predicting the outcomes of head and neck cancer.

Front Immunol. 2024

[6]
Copper homeostasis and copper-induced cell death in tumor immunity: implications for therapeutic strategies in cancer immunotherapy.

Biomark Res. 2024-10-31

[7]
lncRNAs as prognostic markers and therapeutic targets in cuproptosis-mediated cancer.

Clin Exp Med. 2024-9-26

[8]
Bioinformatics analysis and identification of cuproptosis-related long non-coding RNAs in colorectal cancer.

J Int Med Res. 2024-8

[9]
The role of cuproptosis-related genes in pan-cancer and the development of cuproptosis-related risk model in colon adenocarcinoma.

Heliyon. 2024-7-2

[10]
Identifying disulfidptosis subtypes in hepatocellular carcinoma through machine learning and preliminary exploration of its connection with immunotherapy.

Cancer Cell Int. 2024-6-3

本文引用的文献

[1]
Copper induces cell death by targeting lipoylated TCA cycle proteins.

Science. 2022-3-18

[2]
Identification and Validation of a Potent Multi-lncRNA Molecular Model for Predicting Gastric Cancer Prognosis.

Front Genet. 2021-12-20

[3]
Ferroptosis-Related Long Non-Coding RNA Signature Contributes to the Prediction of Prognosis Outcomes in Head and Neck Squamous Cell Carcinomas.

Front Genet. 2021-12-17

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A pyroptosis-related lncRNA signature predicts prognosis and immune microenvironment in head and neck squamous cell carcinoma.

Int Immunopharmacol. 2021-12

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A Novel Prognostic Model Based on Autophagy-Related Long Non-Coding RNAs for Clear Cell Renal Cell Carcinoma.

Front Oncol. 2021-8-3

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Immune Infiltrates of mA RNA Methylation-Related lncRNAs and Identification of PD-L1 in Patients With Primary Head and Neck Squamous Cell Carcinoma.

Front Cell Dev Biol. 2021-6-4

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Ferroptosis-Related Long Non-Coding RNA signature predicts the prognosis of Head and neck squamous cell carcinoma.

Int J Biol Sci. 2021

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Front Oncol. 2020-12-18

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Nat Rev Mol Cell Biol. 2021-2

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Head and neck squamous cell carcinoma.

Nat Rev Dis Primers. 2020-11-26

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