Department of Anesthesiology, Tianjin Medical University General Hospital, Tianjin 300052, China.
Department of Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin 300052, China.
Int J Mol Sci. 2023 Jul 11;24(14):11325. doi: 10.3390/ijms241411325.
Target biomarkers for H at both the protein and genome levels are still unclear. In this study, quantitative proteomics acquired from a mouse model were first analyzed. At the same time, functional pathway analysis helped identify functional pathways at the protein level. Then, bioinformatics on mRNA sequencing data were conducted between sepsis and normal mouse models. Differential expressional genes with the closest relationship to disease status and development were identified through module correlation analysis. Then, common biomarkers in proteomics and transcriptomics were extracted as target biomarkers. Through analyzing expression quantitative trait locus (eQTL) and genome-wide association studies (GWAS), colocalization analysis on Apoa2 and sepsis phenotype was conducted by summary-data-based Mendelian randomization (SMR). Then, two-sample and drug-target, syndrome Mendelian randomization (MR) analyses were all conducted using the Twosample R package. For protein level, protein quantitative trait loci (pQTLs) of the target biomarker were also included in MR. Animal experiments helped validate these results. As a result, Apoa2 protein or mRNA was identified as a target biomarker for H with a protective, causal relationship with sepsis. HDL and type 2 diabetes were proven to possess causal relationships with sepsis. The agitation and inhibition of Apoa2 were indicated to influence sepsis and related syndromes. In conclusion, we first proposed Apoa2 as a target for H treatment.
在蛋白质和基因组水平上,针对 H 的目标生物标志物仍然不清楚。在本研究中,首先分析了来自小鼠模型的定量蛋白质组学。同时,功能途径分析有助于确定蛋白质水平的功能途径。然后,对脓毒症和正常小鼠模型的 mRNA 测序数据进行了生物信息学分析。通过模块相关性分析,确定了与疾病状态和发展最密切相关的差异表达基因。然后,提取蛋白质组学和转录组学中常见的生物标志物作为目标生物标志物。通过分析表达数量性状基因座 (eQTL) 和全基因组关联研究 (GWAS),通过基于汇总数据的孟德尔随机化 (SMR) 对 Apoa2 和脓毒症表型进行共定位分析。然后,使用 TwoSample R 包进行了两样本和药物-靶标、综合征孟德尔随机化 (MR) 分析。对于蛋白质水平,目标生物标志物的蛋白质数量性状基因座 (pQTL) 也包含在 MR 中。动物实验有助于验证这些结果。结果表明,Apoa2 蛋白或 mRNA 是 H 的一个有保护作用的目标生物标志物,与脓毒症具有因果关系。HDL 和 2 型糖尿病被证明与脓毒症具有因果关系。Apoa2 的激动和抑制作用表明会影响脓毒症和相关综合征。总之,我们首次提出 Apoa2 作为 H 治疗的靶点。