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银屑病的转录组分析:鉴定潜在的因果基因和药物候选物。

A Transcriptome-Wide Analysis of Psoriasis: Identifying the Potential Causal Genes and Drug Candidates.

机构信息

Department of Life Sciences, Dongguk University, Seoul 04620, Republic of Korea.

Department of Life Sciences, Dongguk University-Seoul, Goyang 10326, Republic of Korea.

出版信息

Int J Mol Sci. 2023 Jul 20;24(14):11717. doi: 10.3390/ijms241411717.

Abstract

Psoriasis is a chronic inflammatory skin disease characterized by cutaneous eruptions and pruritus. Because the genetic backgrounds of psoriasis are only partially revealed, an integrative and rigorous study is necessary. We conducted a transcriptome-wide association study (TWAS) with the new Genotype-Tissue Expression version 8 reference panels, including some tissue and multi-tissue panels that were not used previously. We performed tissue-specific heritability analyses on genome-wide association study data to prioritize the tissue panels for TWAS analysis. TWAS and colocalization (COLOC) analyses were performed with eight tissues from the single-tissue panels and the multi-tissue panels of context-specific genetics (CONTENT) to increase tissue specificity and statistical power. From TWAS, we identified the significant associations of 101 genes in the single-tissue panels and 64 genes in the multi-tissue panels, of which 26 genes were replicated in the COLOC. Functional annotation and network analyses identified that the genes were associated with psoriasis and/or immune responses. We also suggested drug candidates that interact with jointly significant genes through a conditional and joint analysis. Together, our findings may contribute to revealing the underlying genetic mechanisms and provide new insights into treatments for psoriasis.

摘要

银屑病是一种慢性炎症性皮肤病,其特征为皮肤疹和瘙痒。由于银屑病的遗传背景仅部分被揭示,因此需要进行综合和严格的研究。我们使用新的基因型-组织表达版本 8 参考面板进行了全转录组关联研究(TWAS),其中包括以前未使用过的一些组织和多组织面板。我们对全基因组关联研究数据进行了组织特异性遗传力分析,以优先选择用于 TWAS 分析的组织面板。我们使用来自单组织面板和特定于上下文的遗传学(CONTENT)的多组织面板的八个组织进行了 TWAS 和共定位(COLOC)分析,以提高组织特异性和统计功效。从 TWAS 中,我们在单组织面板中鉴定出 101 个基因和多组织面板中 64 个基因的显著关联,其中 26 个基因在 COLOC 中得到了复制。功能注释和网络分析表明,这些基因与银屑病和/或免疫反应有关。我们还通过条件和联合分析提出了与共同显著基因相互作用的药物候选物。总之,我们的研究结果可能有助于揭示潜在的遗传机制,并为银屑病的治疗提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38c4/10380797/d1e9590edf32/ijms-24-11717-g001.jpg

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