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抗氧化杂合分子:化学基元是否具有加和性?以基于硒的配体为例。

Antioxidant Chimeric Molecules: Are Chemical Motifs Additive? The Case of a Selenium-Based Ligand.

机构信息

Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131 Padova, Italy.

CNRS, Aix Marseille Université, BIP, IMM, IM2B, 31 Chemin J. Aiguier, 13009 Marseille, France.

出版信息

Int J Mol Sci. 2023 Jul 22;24(14):11797. doi: 10.3390/ijms241411797.

Abstract

We set up an in silico experiment and designed a chimeric compound integrating molecular features from different efficient ROS (Reactive Oxygen Species) scavengers, with the purpose of investigating potential relationships between molecular structure and antioxidant activity. Furthermore, a selenium centre was inserted due to its known capacity to reduce hydroperoxides, acting as a molecular mimic of glutathione peroxidase; finally, since this organoselenide is a precursor of a N-heterocyclic carbene ligand, its Au(I) carbene complex was designed and examined. A validated protocol based on DFT (Density Functional Theory) was employed to investigate the radical scavenging activity of available sites on the organoselenide precursor ((SMD)-M06-2X/6-311+G(d,p)//M06-2X/6-31G(d)), as well as on the organometallic complex ((SMD)-M06-2X/SDD (Au), 6-311+G(d,p)//ZORA-BLYP-D3(BJ)/TZ2P), considering HAT (Hydrogen Atom Transfer) and RAF (Radical Adduct Formation) regarding five different radicals. The results of this case study suggest that the antioxidant potential of chemical motifs should not be considered as an additive property when designing a chimeric compound, but rather that the relevance of a molecular topology is derived from a chemical motif combined with an opportune chemical space of the molecule. Thus, the direct contributions of single functional groups which are generally thought of as antioxidants per se do not guarantee the efficient radical scavenging potential of a molecular species.

摘要

我们建立了一个计算实验,并设计了一种嵌合体化合物,该化合物整合了来自不同高效 ROS(活性氧物种)清除剂的分子特征,目的是研究分子结构与抗氧化活性之间的潜在关系。此外,由于硒中心已知具有还原过氧化物的能力,因此插入了一个硒中心,作为谷胱甘肽过氧化物酶的分子模拟物;最后,由于这种有机硒化物是 N-杂环卡宾配体的前体,因此设计并检查了其金(I)卡宾配合物。采用基于 DFT(密度泛函理论)的验证方案来研究有机硒化物前体((SMD)-M06-2X/6-311+G(d,p)//M06-2X/6-31G(d))上可用位点的清除自由基活性,以及有机金属配合物((SMD)-M06-2X/SDD(Au),6-311+G(d,p)//ZORA-BLYP-D3(BJ)/TZ2P),考虑了五种不同自由基的 HAT(氢原子转移)和 RAF(自由基加成物形成)。该案例研究的结果表明,在设计嵌合体化合物时,不应将化学基元的抗氧化潜力视为加性性质,而应从化学基元与分子的合适化学空间相结合的角度来推导分子拓扑结构的相关性。因此,通常被认为是抗氧化剂的单个官能团的直接贡献并不能保证分子物种的有效清除自由基的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/169b/10380222/a5f7215d11ff/ijms-24-11797-sch001.jpg

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