National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi 110067, India.
National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi 110067, India; Department of Plant Sciences, University of Hyderabad, Hyderabad, Telangana 500046, India.
Biochim Biophys Acta Gene Regul Mech. 2023 Sep;1866(3):194966. doi: 10.1016/j.bbagrm.2023.194966. Epub 2023 Jul 31.
Plants control expression of their genes in a way that involves manipulating the chromatin structural dynamics in order to adapt to environmental changes and carry out developmental processes. Histone modifications like histone methylation are significant epigenetic marks which profoundly and globally modify chromatin, potentially affecting the expression of several genes. Methylation of histones is catalyzed by histone lysine methyltransferases (HKMTs), that features an evolutionary conserved domain known as SET [Su(var)3-9, E(Z), Trithorax]. This methylation is directed at particular lysine (K) residues on H3 or H4 histone. Plant SET domain group (SDG) proteins are categorized into different classes that have been conserved through evolution, and each class have specificity that influences how the chromatin structure operates. The domains discovered in plant SET domain proteins have typically been linked to protein-protein interactions, suggesting that majority of the SDGs function in complexes. Additionally, SDG-mediated histone mark deposition also affects alternative splicing events. In present review, we discussed the diversity of SDGs in plants including their structural properties. Additionally, we have provided comprehensive summary of the functions of the SDG-domain containing proteins in plant developmental processes and response to environmental stimuli have also been highlighted.
植物以一种涉及操纵染色质结构动力学的方式来控制基因的表达,以便适应环境变化和进行发育过程。组蛋白修饰,如组蛋白甲基化,是重要的表观遗传标记,它们深刻而广泛地修饰染色质,可能影响多个基因的表达。组蛋白的甲基化由组蛋白赖氨酸甲基转移酶(HKMTs)催化,其具有一个进化上保守的结构域,称为 SET [Su(var)3-9、E(Z)、Trithorax]。这种甲基化作用于 H3 或 H4 组蛋白上的特定赖氨酸(K)残基。植物 SET 结构域蛋白(SDG)被分为不同的类别,这些类别在进化过程中是保守的,每个类别都有特异性,影响染色质结构的运作方式。在植物 SET 结构域蛋白中发现的结构域通常与蛋白质-蛋白质相互作用有关,这表明大多数 SDG 以复合物的形式发挥作用。此外,SDG 介导的组蛋白标记沉积也会影响可变剪接事件。在本综述中,我们讨论了植物中 SDG 的多样性,包括它们的结构特性。此外,我们还全面总结了 SDG 结构域蛋白在植物发育过程中的功能,以及它们对环境刺激的反应。