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Hmox1 被鉴定为铁死亡枢纽基因,并与脊髓损伤中的 M1 型小胶质细胞/巨噬细胞极化相关:生物信息学和实验验证。

Hmox1 is Identified as a Ferroptosis Hub Gene and Associated with the M1 Type Microglia/Macrophage Polarization in Spinal Cord Injury: Bioinformatics and Experimental Validation.

机构信息

Department of Orthopedics, The First Affiliated Hospital of Anhui Medical University, Anhui Medical University, 218 Jixi Road, Hefei, 230022, China.

Department of Orthopedics, The second people's hospital of Hefei, 246 Heping Road, Hefei, 230011, China.

出版信息

Mol Neurobiol. 2023 Dec;60(12):7151-7165. doi: 10.1007/s12035-023-03543-0. Epub 2023 Aug 3.

Abstract

Ferroptosis and immune cell infiltration are important pathological events in spinal cord injury (SCI), but links between ferroptosis and immune microenvironment after SCI were rare reported. In our study, 77 FRDEGs were screened at 7 days after SCI. GO analysis of FRDEGs showed that aging (GO:0007568; P-value = 1.11E-05) was the most remarkable enriched for biological process, protein binding (GO:0005515; adjusted P-value = 4.44E-06) was the most significantly enriched for molecular function, cytosol (GO:0005829; adjusted P-value = 1.51E-04) was the most prominent enriched for cellular component. Meanwhile, Ferroptosis was significantly enriched both in KEGG (rno04216; adjusted P-value = 0.001) and GSEA (NES = 1.35; adjusted P-value = 0.004) analysis. Next, Hmox1 (LogFold change = 6.52; adjusted P-value = 0.004) was identified as one of hub genes in SCI-induced ferroptosis. In the results of immune cell infiltration analysis, proportion of microglia/macrophage was significantly increased after SCI, and Hmox1 was found to positively correlate to the M1 type microglia/macrophage abundance. Finally, effects of Hmox1 on ferroptosis and M1 type polarization were validated in vivo and in vitro. Summarily, we found that Hmox1 was the hub gene in SCI-induced ferroptosis and associated with the M1 type polarization.

摘要

铁死亡和免疫细胞浸润是脊髓损伤 (SCI) 的重要病理事件,但铁死亡与 SCI 后免疫微环境之间的联系鲜有报道。在我们的研究中,在 SCI 后 7 天筛选到 77 个 FRDEGs。FRDEGs 的 GO 分析表明,衰老(GO:0007568;P 值=1.11E-05)是最显著的生物学过程富集,蛋白结合(GO:0005515;调整后的 P 值=4.44E-06)是最显著的分子功能富集,细胞溶质(GO:0005829;调整后的 P 值=1.51E-04)是最显著的细胞成分富集。同时,铁死亡在 KEGG(rno04216;调整后的 P 值=0.001)和 GSEA(NES=1.35;调整后的 P 值=0.004)分析中均显著富集。接下来,Hmox1(LogFold change=6.52;调整后的 P 值=0.004)被鉴定为 SCI 诱导的铁死亡中的一个枢纽基因。在免疫细胞浸润分析的结果中,SCI 后小胶质细胞/巨噬细胞的比例显著增加,并且发现 Hmox1 与 M1 型小胶质细胞/巨噬细胞丰度呈正相关。最后,在体内和体外验证了 Hmox1 对铁死亡和 M1 型极化的影响。总之,我们发现 Hmox1 是 SCI 诱导的铁死亡的枢纽基因,与 M1 型极化有关。

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