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新属,新种,一种从伊贺越北热液场分离得到的嗜温发酵细菌,并提议建立新科。

gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from the Iheya North hydrothermal field, and proposal of fam. nov.

机构信息

Laboratory of Marine Environmental Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Oiwake-cho, Kitashirakawa, Sakyo-ku, Kyoto 606-8502, Japan.

Depertment of Marine and Earth Sciences, Marine Works Japan Ltd., 3-54-1 Oppamahigashi, Yokosuka 237-0063, Japan.

出版信息

Int J Syst Evol Microbiol. 2023 Aug;73(8). doi: 10.1099/ijsem.0.006014.

Abstract

A novel mesophilic, obligately anaerobic, facultatively sulphur-reducing bacterium, designated strain IC12, was isolated from a deep-sea hydrothermal field in the Mid-Okinawa Trough, Japan. The cells were Gram-negative, motile, short rods with a single polar flagellum. The ranges and optima of the growth temperature, NaCl concentration and pH of strain IC12 were 15-40 °C (optimum, 30-35 °C), 10-60 g l (optimum, 20-30 g l) and pH 4.9-6.7 (optimum, pH 5.8), respectively. Yeast extract was utilized as a sole carbon and energy source for fermentative growth. Major fatty acids of strain IC12 were C, C and C ω7. Results of phylogenetic analysis based on 16S rRNA gene sequences indicated that strain IC12 was affiliated to the phylum and was most closely related to VenChi2 (86.5 % sequence similarity). Strain IC12 contained a chromosome of 2.43 Mbp and a large plasmid of 0.30 Mbp. The G+C content of the genomic DNA was 26.4 mol%. The maximum values for average nucleotide identity and DNA-DNA hybridization between strain IC12 and related strains of the phylum were 71.4 and 26.4 %, respectively. Phylogenomic, physiological and chemotaxonomic analyses indicate that strain IC12 represents a novel genus and species within the phylum , for which the name gen. nov., sp. nov. is proposed, with strain IC12 (= DSM 112164=JCM 39166) as the type strain. We also propose the family fam. nov. to accommodate this novel genus.

摘要

一株新型嗜中温、严格厌氧、兼性硫酸盐还原菌,命名为 IC12 菌株,从日本中太平洋海槽深海热液场中分离得到。细胞呈革兰氏阴性,可运动,短杆状,有单个极生鞭毛。IC12 菌株的生长温度、NaCl 浓度和 pH 值范围及最适范围分别为 15-40°C(最适 30-35°C)、10-60 g l(最适 20-30 g l)和 pH4.9-6.7(最适 pH5.8)。酵母提取物可作为发酵生长的唯一碳源和能源。IC12 菌株的主要脂肪酸为 C、C 和 Cω7。基于 16S rRNA 基因序列的系统发育分析结果表明,菌株 IC12 属于门,与 VenChi2 最为密切相关(86.5%序列相似性)。IC12 菌株含有一条 2.43 Mbp 的染色体和一条 0.30 Mbp 的大型质粒。基因组 DNA 的 G+C 含量为 26.4 mol%。菌株 IC12 与门内相关菌株的平均核苷酸同一性和 DNA-DNA 杂交的最大值分别为 71.4%和 26.4%。系统发育基因组学、生理学和化学分类学分析表明,菌株 IC12 代表了一个新的属和种,属于门,命名为 ,新属,种。提议,IC12 株(=DSM 112164=JCM 39166)为模式菌株。我们还提议建立一个新的科 ,以容纳这个新的属。

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