Laboratory of Marine Environmental Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Oiwake-Cho, Kitashirakawa, Kyoto, 606-8502, Japan.
Department of Marine and Earth Sciences, Marine Works Japan Ltd., 3-54-1 Oppamahigashi, Yokosuka, 237-0063, Japan.
Extremophiles. 2023 Oct 16;27(3):28. doi: 10.1007/s00792-023-01316-0.
A novel hyperthermophilic, heterotrophic archaeon, strain YC29, was isolated from a deep-sea hydrothermal vent in the Mid-Okinawa Trough, Japan. Cells of strain YC29 were non-motile, irregular cocci with diameters of 1.2-3.0 µm. The strain was an obligatory fermentative anaerobe capable of growth on complex proteinaceous substrates. Growth was observed between 85 and 100 °C (optimum 90-95 °C), pH 4.9-6.4 (optimum 5.1), and in the presence of 1.4-4.0% (w/v) NaCl (optimum 3.0%). Inorganic carbon was required as a carbon source. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the family Pyrodictiaceae. The genome size was 2.02 Mbp with a G+C content of 49.4%. The maximum values for average nucleotide identity (ANI), average amino acid identity (AAI), and in silico DNA-DNA hybridization (dDDH) value of strain YC29 with relatives were 67.9% (with Pyrodictium abyssi strain AV2), 61.1% (with Pyrodictium occultum strain PL-19), and 33.8% (with Pyrolobus fumarii strain 1A), respectively. Based on the phylogenetic, genomic, and phenotypic characteristics, we propose that strain YC29 represents a novel genus and species, Pyrofollis japonicus gen. nov., sp. (type strain YC29 = DSM 113394 = JCM 39171).
一种新型的嗜热、异养古菌,菌株 YC29,是从日本中东海域深海热液喷口分离得到的。YC29 菌株的细胞是非运动的、不规则的球菌,直径为 1.2-3.0µm。该菌株是一种严格的发酵厌氧菌,能够在复杂的蛋白质底物上生长。在 85-100°C(最佳 90-95°C)、pH4.9-6.4(最佳 5.1)和 1.4-4.0%(w/v)NaCl(最佳 3.0%)存在下观察到生长。需要无机碳作为碳源。基于 16S rRNA 基因序列的系统发育分析表明,该分离株是 Pyrodictiaceae 科的成员。基因组大小为 2.02 Mbp,G+C 含量为 49.4%。YC29 菌株与亲缘关系的平均核苷酸同一性(ANI)、平均氨基酸同一性(AAI)和体外 DNA-DNA 杂交(dDDH)值的最大值分别为 67.9%(与 Pyrodictium abyssi 菌株 AV2)、61.1%(与 Pyrodictium occultum 菌株 PL-19)和 33.8%(与 Pyrolobus fumarii 菌株 1A)。基于系统发育、基因组和表型特征,我们建议 YC29 菌株代表一个新属和新种,Pyrofollis japonicus gen. nov.,sp.(模式菌株 YC29=DSM 113394=JCM 39171)。