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拟南芥花突变体的遗传筛选:增强子和抑制子。

Genetic Screens for Floral Mutants in Arabidopsis thaliana: Enhancers and Suppressors.

机构信息

Hunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha, China.

Department of Botany and Plant Sciences, University of California, Riverside, CA, USA.

出版信息

Methods Mol Biol. 2023;2686:131-162. doi: 10.1007/978-1-0716-3299-4_6.

DOI:10.1007/978-1-0716-3299-4_6
PMID:37540357
Abstract

The flower is a hallmark feature that has contributed to the evolutionary success of land plants. Diverse mutagenic agents have been employed as a tool to genetically perturb flower development and identify genes involved in floral patterning and morphogenesis. Since the initial studies to identify genes governing processes such as floral organ specification, mutagenesis in sensitized backgrounds has been used to isolate enhancers and suppressors to further probe the molecular basis of floral development. Here, we first describe two commonly employed methods for mutagenesis (using ethyl methanesulfonate (EMS) or T-DNAs as mutagens), and then describe three methods for identifying a mutation that leads to phenotypic alterations: traditional map-based cloning, modified high-efficiency thermal asymmetric interlaced PCR (mhiTAIL-PCR), and deep sequencing in the plant model Arabidopsis thaliana.

摘要

花是一个标志性特征,它促进了陆地植物的进化成功。多种诱变剂已被用作工具,用于遗传干扰花发育并鉴定参与花模式形成和形态发生的基因。自最初鉴定控制花器官特化等过程的基因的研究以来,在敏感背景下进行诱变已被用于分离增强子和抑制剂,以进一步探究花发育的分子基础。在这里,我们首先描述了两种常用的诱变方法(使用乙基甲烷磺酸酯(EMS)或 T-DNAs 作为诱变剂),然后描述了三种用于鉴定导致表型改变的突变的方法:传统的基于图谱的克隆、改良的高效热不对称交错 PCR(mhiTAIL-PCR)和植物模式拟南芥中的深度测序。

相似文献

1
Genetic Screens for Floral Mutants in Arabidopsis thaliana: Enhancers and Suppressors.拟南芥花突变体的遗传筛选:增强子和抑制子。
Methods Mol Biol. 2023;2686:131-162. doi: 10.1007/978-1-0716-3299-4_6.
2
Genetic screens for floral mutants in Arabidopsis thaliana: enhancers and suppressors.拟南芥花突变体的遗传筛选:增强子和抑制子
Methods Mol Biol. 2014;1110:127-56. doi: 10.1007/978-1-4614-9408-9_6.
3
EMS mutagenesis of Arabidopsis.拟南芥的EMS诱变
Methods Mol Biol. 2006;323:101-3. doi: 10.1385/1-59745-003-0:101.
4
Next-Gen Sequencing-Based Mapping and Identification of Ethyl Methanesulfonate-Induced Mutations in Arabidopsis thaliana.基于新一代测序技术对拟南芥中甲基磺酸乙酯诱导突变的定位与鉴定
Curr Protoc Mol Biol. 2014 Oct 1;108:7.18.1-7.18.16. doi: 10.1002/0471142727.mb0718s108.
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Suppressor Screens in Arabidopsis.拟南芥中的抑制子筛选
Methods Mol Biol. 2016;1363:1-8. doi: 10.1007/978-1-4939-3115-6_1.
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Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis.拟南芥大规模反向遗传筛选中化学诱导突变的谱
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Generation and identification of Arabidopsis EMS mutants.拟南芥EMS突变体的产生与鉴定
Methods Mol Biol. 2014;1062:225-39. doi: 10.1007/978-1-62703-580-4_12.
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EMS Mutagenesis of Arabidopsis Seeds.EMS 诱变拟南芥种子。
Methods Mol Biol. 2020;2122:15-23. doi: 10.1007/978-1-0716-0342-0_2.
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Generation of EMS-Mutagenized Populations of Arabidopsis thaliana for Polyamine Genetics.用于多胺遗传学研究的拟南芥EMS诱变群体的构建
Methods Mol Biol. 2018;1694:343-346. doi: 10.1007/978-1-4939-7398-9_29.
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Mutagenesis in Arabidopsis.拟南芥中的诱变作用。
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本文引用的文献

1
High-performance pipeline for MutMap and QTL-seq.高通量 MutMap 和 QTL-seq 分析流水线
PeerJ. 2022 Mar 18;10:e13170. doi: 10.7717/peerj.13170. eCollection 2022.
2
A modified high-efficiency thermal asymmetric interlaced PCR method for amplifying long unknown flanking sequences.一种用于扩增长未知侧翼序列的改良高效热不对称交错PCR方法。
J Genet Genomics. 2019 Jul 20;46(7):363-366. doi: 10.1016/j.jgg.2019.05.002. Epub 2019 Jun 23.
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HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression.
夏威夷裙通过调节CUC1和CUC2的表达来控制大小和花器官数量。
PLoS One. 2017 Sep 21;12(9):e0185106. doi: 10.1371/journal.pone.0185106. eCollection 2017.
4
APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.在拟南芥中,APETALA2在调控花干细胞过程中拮抗AGAMOUS的转录活性。
New Phytol. 2017 Aug;215(3):1197-1209. doi: 10.1111/nph.14151. Epub 2016 Sep 8.
5
FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.远红光伸长下胚轴3激活SEPALLATA2但抑制CLAVATA3以调控拟南芥分生组织的确定性和维持。
Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9375-80. doi: 10.1073/pnas.1602960113. Epub 2016 Jul 28.
6
AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy.生长素响应因子3整合了AGAMOUS和APETALA2在花分生组织确定性中的功能。
Plant J. 2014 Nov;80(4):629-41. doi: 10.1111/tpj.12658. Epub 2014 Oct 1.
7
DNA topoisomerase I affects polycomb group protein-mediated epigenetic regulation and plant development by altering nucleosome distribution in Arabidopsis.DNA拓扑异构酶I通过改变拟南芥中的核小体分布来影响多梳蛋白介导的表观遗传调控和植物发育。
Plant Cell. 2014 Jul;26(7):2803-17. doi: 10.1105/tpc.114.124941. Epub 2014 Jul 28.
8
POWERDRESS and diversified expression of the MIR172 gene family bolster the floral stem cell network.POWERDRESS 和 MIR172 基因家族的多样化表达支撑着花分生组织细胞网络。
PLoS Genet. 2013;9(1):e1003218. doi: 10.1371/journal.pgen.1003218. Epub 2013 Jan 17.
9
Gene discovery using mutagen-induced polymorphisms and deep sequencing: application to plant disease resistance.利用诱变诱导的多态性和深度测序进行基因发现:在植物抗病性中的应用。
Genetics. 2012 Sep;192(1):139-46. doi: 10.1534/genetics.112.141986. Epub 2012 Jun 19.
10
AGAMOUS terminates floral stem cell maintenance in Arabidopsis by directly repressing WUSCHEL through recruitment of Polycomb Group proteins.AGAMOUS 通过招募 Polycomb 蛋白直接抑制 WUSCHEL 来终止拟南芥花茎干细胞的维持。
Plant Cell. 2011 Oct;23(10):3654-70. doi: 10.1105/tpc.111.091538. Epub 2011 Oct 25.