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本文引用的文献

1
Using evolutionary data to make sense of macromolecules with a "face-lifted" ConSurf.利用进化数据,通过“改头换面”的 ConSurf 来理解大分子。
Protein Sci. 2023 Mar;32(3):e4582. doi: 10.1002/pro.4582.
2
Origins of DNA replication in eukaryotes.真核生物中 DNA 复制的起源。
Mol Cell. 2023 Feb 2;83(3):352-372. doi: 10.1016/j.molcel.2022.12.024. Epub 2023 Jan 13.
3
Cell cycle-specific phase separation regulated by protein charge blockiness.蛋白质电荷阻塞调控的细胞周期特异性相分离。
Nat Cell Biol. 2022 May;24(5):625-632. doi: 10.1038/s41556-022-00903-1. Epub 2022 May 5.
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Lrwd1 impacts cell proliferation and the silencing of repetitive DNA elements.LRWD1 影响细胞增殖和重复 DNA 元件的沉默。
Genesis. 2022 May;60(4-5):e23475. doi: 10.1002/dvg.23475. Epub 2022 Apr 22.
5
The Initiation of Eukaryotic DNA Replication.真核生物 DNA 复制的启动。
Annu Rev Biochem. 2022 Jun 21;91:107-131. doi: 10.1146/annurev-biochem-072321-110228. Epub 2022 Mar 23.
6
The consequences of differential origin licensing dynamics in distinct chromatin environments.不同染色质环境中差异起源许可动力学的后果。
Nucleic Acids Res. 2022 Sep 23;50(17):9601-9620. doi: 10.1093/nar/gkac003.
7
The solid and liquid states of chromatin.染色质的固态和液态。
Epigenetics Chromatin. 2021 Oct 30;14(1):50. doi: 10.1186/s13072-021-00424-5.
8
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing.DeepEMhancer:一种用于冷冻电镜体积后处理的深度学习解决方案。
Commun Biol. 2021 Jul 15;4(1):874. doi: 10.1038/s42003-021-02399-1.
9
3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM.3D 变异性分析:从单颗粒冷冻电镜中解析连续的柔韧性和离散的异质性。
J Struct Biol. 2021 Jun;213(2):107702. doi: 10.1016/j.jsb.2021.107702. Epub 2021 Feb 11.
10
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction.非均匀细化:自适应正则化可改善单颗粒冷冻电镜重构。
Nat Methods. 2020 Dec;17(12):1214-1221. doi: 10.1038/s41592-020-00990-8. Epub 2020 Nov 30.

ORCA/LRWD1 作为染色质阅读器在靶向起始识别复合物到染色质中的双重作用。

A dual role for the chromatin reader ORCA/LRWD1 in targeting the origin recognition complex to chromatin.

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.

出版信息

EMBO J. 2023 Sep 18;42(18):e114654. doi: 10.15252/embj.2023114654. Epub 2023 Aug 8.

DOI:10.15252/embj.2023114654
PMID:37551430
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10505921/
Abstract

Eukaryotic cells use chromatin marks to regulate the initiation of DNA replication. The origin recognition complex (ORC)-associated protein ORCA plays a critical role in heterochromatin replication in mammalian cells by recruiting the initiator ORC, but the underlying mechanisms remain unclear. Here, we report crystal and cryo-electron microscopy structures of ORCA in complex with ORC's Orc2 subunit and nucleosomes, establishing that ORCA orchestrates ternary complex assembly by simultaneously recognizing a highly conserved peptide sequence in Orc2, nucleosomal DNA, and repressive histone trimethylation marks through an aromatic cage. Unexpectedly, binding of ORCA to nucleosomes prevents chromatin array compaction in a manner that relies on H4K20 trimethylation, a histone modification critical for heterochromatin replication. We further show that ORCA is necessary and sufficient to specifically recruit ORC into chromatin condensates marked by H4K20 trimethylation, providing a paradigm for studying replication initiation in specific chromatin contexts. Collectively, our findings support a model in which ORCA not only serves as a platform for ORC recruitment to nucleosomes bearing specific histone marks but also helps establish a local chromatin environment conducive to subsequent MCM2-7 loading.

摘要

真核细胞利用染色质标记来调节 DNA 复制的起始。ORC 相关蛋白 ORCA 通过招募起始因子 ORC,在哺乳动物细胞中发挥着关键作用,但其潜在机制仍不清楚。在这里,我们报道了 ORCA 与 ORC 的 Orc2 亚基和核小体复合物的晶体和冷冻电镜结构,确定 ORCA 通过同时识别 Orc2 中高度保守的肽序列、核小体 DNA 和抑制性组蛋白三甲基化标记,通过芳香族笼来协调三元复合物的组装。出乎意料的是,ORCA 与核小体的结合以一种依赖于 H4K20 三甲基化的方式防止染色质阵列的紧缩,H4K20 三甲基化是异染色质复制的关键组蛋白修饰。我们进一步表明,ORCA 是将 ORC 特异性招募到 H4K20 三甲基化标记的染色质浓缩物中所必需和充分的,为研究特定染色质环境中的复制起始提供了一个范例。总的来说,我们的研究结果支持了这样一种模型,即 ORCA 不仅作为一个平台,将 ORC 招募到具有特定组蛋白标记的核小体上,而且有助于建立有利于随后的 MCM2-7 加载的局部染色质环境。