Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.
EMBO J. 2023 Sep 18;42(18):e114654. doi: 10.15252/embj.2023114654. Epub 2023 Aug 8.
Eukaryotic cells use chromatin marks to regulate the initiation of DNA replication. The origin recognition complex (ORC)-associated protein ORCA plays a critical role in heterochromatin replication in mammalian cells by recruiting the initiator ORC, but the underlying mechanisms remain unclear. Here, we report crystal and cryo-electron microscopy structures of ORCA in complex with ORC's Orc2 subunit and nucleosomes, establishing that ORCA orchestrates ternary complex assembly by simultaneously recognizing a highly conserved peptide sequence in Orc2, nucleosomal DNA, and repressive histone trimethylation marks through an aromatic cage. Unexpectedly, binding of ORCA to nucleosomes prevents chromatin array compaction in a manner that relies on H4K20 trimethylation, a histone modification critical for heterochromatin replication. We further show that ORCA is necessary and sufficient to specifically recruit ORC into chromatin condensates marked by H4K20 trimethylation, providing a paradigm for studying replication initiation in specific chromatin contexts. Collectively, our findings support a model in which ORCA not only serves as a platform for ORC recruitment to nucleosomes bearing specific histone marks but also helps establish a local chromatin environment conducive to subsequent MCM2-7 loading.
真核细胞利用染色质标记来调节 DNA 复制的起始。ORC 相关蛋白 ORCA 通过招募起始因子 ORC,在哺乳动物细胞中发挥着关键作用,但其潜在机制仍不清楚。在这里,我们报道了 ORCA 与 ORC 的 Orc2 亚基和核小体复合物的晶体和冷冻电镜结构,确定 ORCA 通过同时识别 Orc2 中高度保守的肽序列、核小体 DNA 和抑制性组蛋白三甲基化标记,通过芳香族笼来协调三元复合物的组装。出乎意料的是,ORCA 与核小体的结合以一种依赖于 H4K20 三甲基化的方式防止染色质阵列的紧缩,H4K20 三甲基化是异染色质复制的关键组蛋白修饰。我们进一步表明,ORCA 是将 ORC 特异性招募到 H4K20 三甲基化标记的染色质浓缩物中所必需和充分的,为研究特定染色质环境中的复制起始提供了一个范例。总的来说,我们的研究结果支持了这样一种模型,即 ORCA 不仅作为一个平台,将 ORC 招募到具有特定组蛋白标记的核小体上,而且有助于建立有利于随后的 MCM2-7 加载的局部染色质环境。