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基于免疫相关基因挖掘甲状腺癌患者预后生物标志物及构建可靠预后风险模型。

Mining Prognostic Biomarkers of Thyroid Cancer Patients Based on the Immune-Related Genes and Development of a Reliable Prognostic Risk Model.

机构信息

Department of Reproductive Genetics, International Peace Maternity and Child Health Hospital, Shanghai Key Laboratory of Embryo Original Diseases, Shanghai Municipal Key Clinical Specialty, Shanghai Jiao Tong University School of Medicine, Shanghai 200030, China.

出版信息

Mediators Inflamm. 2023 Jul 31;2023:6503476. doi: 10.1155/2023/6503476. eCollection 2023.

Abstract

PURPOSE

Tumor immunity serves an essential role in the occurrence and development of thyroid cancer (THCA). The aim of this study is to establish an immune-related prognostic model for THCA patients by using immune-related genes (IRGs).

METHODS

Wilcox test was used to screen the differentially expressed immune-related genes (DEIRGs) in THCA and normal tissues, then the DEIRGs related to prognosis were identified using univariate Cox regression analysis. According to The Cancer Genome Atlas (TCGA) cohort, we developed a least absolute shrinkage and selection operator (LASSO) regression prognostic model and performed validation analyses regard to the predictive value of the model in internal (TCGA) and external (International Cancer Genome Consortium) cohorts respectively. Finally, we analyzed the correlation among the prognostic model, clinical variables, and immune cell infiltration.

RESULTS

Eighty-two of 2,498 IRGs were differentially expressed between THCA and normal tissues, and 18 of them were related to prognosis. LASSO Cox regression analysis identified seven DEIRGs with the greatest prognostic value to construct the prognostic model. The risk model showed high predictive value for the survival of THCA in two independent cohorts. The risk score according to the risk model was positively associated with poor survival and the infiltration levels of immune cells, it can evaluate the prognosis of THCA patients independent of any other clinicopathologic feature. The prognostic value and genetic alternations of seven risk genes were evaluated separately.

CONCLUSION

Our study established and verified a dependable prognostic model associated with immune for THCA, both the identified IRGs and immune-related risk model were clinically significant, which is conducive to promoting individualized immunotherapy against THCA.

摘要

目的

肿瘤免疫在甲状腺癌(THCA)的发生和发展中起着至关重要的作用。本研究旨在利用免疫相关基因(IRGs)建立 THCA 患者的免疫相关预后模型。

方法

采用 Wilcox 检验筛选 THCA 与正常组织中的差异表达免疫相关基因(DEIRGs),然后采用单因素 Cox 回归分析筛选与预后相关的 DEIRGs。根据 The Cancer Genome Atlas(TCGA)队列,我们开发了最小绝对收缩和选择算子(LASSO)回归预后模型,并分别对模型在内部(TCGA)和外部(国际癌症基因组联合会)队列中的预测价值进行验证分析。最后,我们分析了预后模型、临床变量和免疫细胞浸润之间的相关性。

结果

2498 个 IRGs 中有 82 个在 THCA 与正常组织之间存在差异表达,其中 18 个与预后相关。LASSO Cox 回归分析确定了 7 个具有最大预后价值的 DEIRGs 来构建预后模型。该风险模型在两个独立的队列中对 THCA 的生存具有较高的预测价值。根据风险模型计算的风险评分与较差的生存和免疫细胞浸润水平呈正相关,它可以独立于任何其他临床病理特征评估 THCA 患者的预后。分别评估了七个风险基因的预后价值和遗传改变。

结论

本研究建立并验证了一个与 THCA 相关的可靠免疫预后模型,所确定的 IRGs 和免疫相关风险模型具有临床意义,有助于促进针对 THCA 的个体化免疫治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6042/10406562/a7800d59f4e4/MI2023-6503476.001.jpg

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