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杂色拟盘多毛孢的完整基因组序列,一种对杨梅生产有影响的致病性子囊菌真菌。

The completed genome sequence of Pestalotiopsis versicolor, a pathogenic ascomycete fungus with implications for bayberry production.

作者信息

Guo Junning, Ren Haiying, Ijaz Munazza, Qi Xingjiang, Ahmed Temoor, You Yuxin, Li Gang, Yu Zheping, Islam Mohammad Shafiqul, Ali Hayssam M, Sun Li, Li Bin

机构信息

State Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China; State Key Laboratory for Managing Biotic and Chemical Treats to the Quality and Safety of Agro-Products, Institute of Horticulture, Institute of Agro-product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.

State Key Laboratory for Managing Biotic and Chemical Treats to the Quality and Safety of Agro-Products, Institute of Horticulture, Institute of Agro-product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.

出版信息

Genomics. 2023 Sep;115(5):110695. doi: 10.1016/j.ygeno.2023.110695. Epub 2023 Aug 7.

Abstract

The pathogenic fungus Pestalotiopsis versicolor is a major etiological agent of fungal twig blight disease affecting bayberry trees. However, the lack of complete genome sequence information for this crucial pathogenic fungus hinders the molecular and genetic investigation of its pathogenic mechanism. To address this knowledge gap, we have generated the complete genome sequence of P. versicolor strain XJ27, employing a combination of Illumina, PacBio, and Hi-C sequencing technologies. This comprehensive genome sequence, comprising 7 chromosomes with an N50 contig size of 7,275,017 bp, a GC content ratio of 50.16%, and a total size of 50.80 Mb, encompasses 13,971 predicted coding genes. By performing comparative genomic analysis between P. versicolor and the genomes of eleven plant-pathogenic fungi, as well as three closely related fungi within the same group, we have gained initial insights into its evolutionary trajectory, particularly through gene family analysis. These findings shed light on the distinctive characteristics and evolutionary history of P. versicolor. Importantly, the availability of this high-quality genetic resource will serve as a foundational tool for investigating the biology, molecular pathogenesis, and virulence of P. versicolor. Furthermore, it will facilitate the development of more potent antifungal medications by uncovering potential vulnerabilities in its genetic makeup.

摘要

病原菌杂色拟盘多毛孢是影响杨梅树的真菌性枝枯病的主要病原体。然而,这种关键病原菌缺乏完整的基因组序列信息,阻碍了对其致病机制的分子和遗传学研究。为了填补这一知识空白,我们利用Illumina、PacBio和Hi-C测序技术相结合的方法,生成了杂色拟盘多毛孢菌株XJ27的完整基因组序列。这个完整的基因组序列由7条染色体组成,N50重叠群大小为7,275,017 bp,GC含量为50.16%,总大小为50.80 Mb,包含13,971个预测的编码基因。通过对杂色拟盘多毛孢与11种植物病原真菌以及同一组内3种近缘真菌的基因组进行比较基因组分析,我们初步了解了其进化轨迹,特别是通过基因家族分析。这些发现揭示了杂色拟盘多毛孢的独特特征和进化历史。重要的是,这种高质量遗传资源的可用性将作为研究杂色拟盘多毛孢生物学、分子发病机制和毒力的基础工具。此外,通过揭示其基因组成中的潜在弱点,它将有助于开发更有效的抗真菌药物。

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