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牙菌斑作为动物微生物群落的替代物。

Dental calculus as a proxy for animal microbiomes.

作者信息

Ozga Andrew T, Ottoni Claudio

机构信息

Nova Southeastern University, Halmos College of Arts and Sciences, Fort Lauderdale, FL, 33314, USA.

DANTE - Diet and ANcient TEchnology Laboratory, Department of Oral and Maxillo-Facial Sciences, "Sapienza" University of Rome, 00161, Rome, Italy.

出版信息

Quat Int. 2023 Apr 20;653-654:47-52. doi: 10.1016/j.quaint.2021.06.012.

DOI:10.1016/j.quaint.2021.06.012
PMID:37559969
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7614904/
Abstract

The field of dental calculus research has exploded in recent years, predominantly due to the multitude of studies related to human genomes and oral pathogens. Despite having a subset of these studies devoted to non-human primates, little progress has been made in the distribution of oral pathogens across domestic and wild animal populations. This overlooked avenue of research is particularly important at present when many animal populations with the potentiality for zoonotic transmission continue to reside in close proximity to human groups due to reasons such as deforestation and climatic impacts on resource availability. Here, we analyze all previously available published oral microbiome data recovered from the skeletal remains of animals, all of which belong to the Mammalia class. Our genus level results emphasize the tremendous diversity of oral ecologies across mammals in spite of the clustering based primarily on host species. We also discuss the caveats and flaws in analyzing ancient animal oral microbiomes at the species level of classification. Lastly, we assess the benefits, challenges, and gaps in the current knowledge of dental calculus research within animals and postulate the future of the field as a whole.

摘要

近年来,牙结石研究领域发展迅速,这主要归功于众多与人类基因组和口腔病原体相关的研究。尽管有一部分研究致力于非人类灵长类动物,但在口腔病原体在 domestic 和野生动物群体中的分布方面进展甚微。目前,这条被忽视的研究途径尤为重要,因为由于森林砍伐和气候对资源可用性的影响等原因,许多具有人畜共患病传播潜力的动物群体继续与人类群体近距离生活。在这里,我们分析了所有先前从动物骨骼遗骸中获取的已发表的口腔微生物组数据,所有这些动物都属于哺乳纲。我们在属水平上的结果强调了尽管主要基于宿主物种聚类,但哺乳动物口腔生态具有巨大的多样性。我们还讨论了在物种分类水平上分析古代动物口腔微生物组时的注意事项和缺陷。最后,我们评估了当前动物牙结石研究知识中的益处、挑战和差距,并推测了该领域的整体未来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/926ac91c46de/EMS182317-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/0b063d2d044e/EMS182317-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/ee6286807ccb/EMS182317-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/926ac91c46de/EMS182317-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/0b063d2d044e/EMS182317-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/ee6286807ccb/EMS182317-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f7/7614904/926ac91c46de/EMS182317-f003.jpg

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本文引用的文献

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Nature. 2021 Mar;591(7849):265-269. doi: 10.1038/s41586-021-03224-9. Epub 2021 Feb 17.
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Ancient protein analysis in archaeology.考古学中的古代蛋白质分析。
Sci Adv. 2021 Jan 15;7(3). doi: 10.1126/sciadv.abb9314. Print 2021 Jan.
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Investigating the demographic history of Japan using ancient oral microbiota.利用古代口腔微生物组探究日本的人口历史。
古牙垢揭示了英国与生活方式和疾病相关的口腔微生物组变化。
Nat Microbiol. 2023 Dec;8(12):2315-2325. doi: 10.1038/s41564-023-01527-3. Epub 2023 Nov 29.
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Ecology, Not Host Phylogeny, Shapes the Oral Microbiome in Closely Related Species.生态而非宿主系统发育塑造了近缘物种口腔微生物组。
Mol Biol Evol. 2022 Dec 5;39(12). doi: 10.1093/molbev/msac263.
Philos Trans R Soc Lond B Biol Sci. 2020 Nov 23;375(1812):20190578. doi: 10.1098/rstb.2019.0578. Epub 2020 Oct 5.
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Effects of novel dental chews on oral health outcomes and halitosis in adult dogs.新型咀嚼物对成年犬口腔健康状况和口臭的影响。
J Anim Sci. 2020 Sep 1;98(9). doi: 10.1093/jas/skaa274.
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Mol Biol Evol. 2020 Oct 1;37(10):3003-3022. doi: 10.1093/molbev/msaa135.
6
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Sci Rep. 2019 Dec 23;9(1):19637. doi: 10.1038/s41598-019-56074-x.
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HOPS: automated detection and authentication of pathogen DNA in archaeological remains.HOPS:考古遗存中病原体 DNA 的自动检测和鉴定。
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