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二域漆酶三核铜簇氨基酸环境的结构洞察。

Structural Insight into the Amino Acid Environment of the Two-Domain Laccase's Trinuclear Copper Cluster.

机构信息

Institute of Protein Research RAS, 142290 Pushchino, Russia.

出版信息

Int J Mol Sci. 2023 Jul 25;24(15):11909. doi: 10.3390/ijms241511909.

Abstract

Laccases are industrially relevant enzymes. However, their range of applications is limited by their functioning and stability. Most of the currently known laccases function in acidic conditions at temperatures below 60 °C, but two-domain laccases (2D) oxidize some substrates in alkaline conditions and above 70 °C. In this study, we aim to establish the structural factors affecting the alkaline activity of the 2D laccase from (SgfSL). The range of methods used allowed us to show that the alkaline activity of SgfSL is influenced by the polar residues located close to the trinuclear center (TNC). Structural and functional studies of the SgfSL mutants Met199Ala/Asp268Asn and Met199Gly/Asp268Asn revealed that the substitution Asp268Asn (11 Å from the TNC) affects the orientation of the Asn261 (the second coordination sphere of the TNC), resulting in hydrogen-bond-network reorganization, which leads to a change in the SgfSL-activity pH profile. The combination of the Met199Gly/Arg240His and Asp268Asn substitutions increased the efficiency (k/K) of the 2,6-DMP oxidation by 34-fold compared with the SgfSL. Our results extend the knowledge about the structure and functioning of 2D laccases' TNC active sites and open up new possibilities for the directed engineering of laccases.

摘要

漆酶是具有工业应用价值的酶。然而,由于其功能和稳定性的限制,其应用范围有限。目前已知的大多数漆酶在低于 60°C 的酸性条件下发挥作用,但双结构域漆酶(2D)在碱性条件和 70°C 以上氧化一些底物。在这项研究中,我们旨在确定影响 (SgfSL)2D 漆酶碱性活性的结构因素。所使用的方法范围使我们能够表明,SgfSL 的碱性活性受靠近三核中心(TNC)的极性残基的影响。SgfSL 突变体 Met199Ala/Asp268Asn 和 Met199Gly/Asp268Asn 的结构和功能研究表明,Asp268Asn(距 TNC 11 Å)的取代会影响 TNC 第二个配位层的 Asn261 的取向,导致氢键网络重组,从而导致 SgfSL-活性 pH 曲线的变化。Met199Gly/Arg240His 和 Asp268Asn 取代的组合使 2,6-DMP 氧化的效率(k/K)比 SgfSL 提高了 34 倍。我们的结果扩展了关于 2D 漆酶 TNC 活性位点结构和功能的知识,并为漆酶的定向工程开辟了新的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa96/10419308/070888983a33/ijms-24-11909-g001.jpg

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