Tiwari Ashutosh, Krisnawati Dyah Ika, Cheng Tsai-Mu, Kuo Tsung-Rong
International Ph.D. Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei 11031, Taiwan.
Department of Nursing, Faculty of Nursing and Midwifery, Universitas Nahdlatul Ulama Surabaya, Surabaya 60237, East Java, Indonesia.
Int J Mol Sci. 2024 Dec 4;25(23):13035. doi: 10.3390/ijms252313035.
Laccases, multi-copper oxidases, play pivotal roles in the oxidation of a variety of substrates, impacting numerous biological functions and industrial processes. However, their industrial adoption has been limited by challenges in thermostability. This study employed advanced computational models, including random forest (RF) regressors and convolutional neural networks (CNNs), to predict and enhance the thermostability of laccases. Initially, the RF model estimated melting temperatures with a training mean squared error (MSE) of 13.98, and while it demonstrated high training accuracy (93.01%), the test and validation MSEs of 48.81 and 58.42, respectively, indicated areas for model optimization. The CNN model further refined these predictions, achieving lower training and validation MSEs, thus demonstrating enhanced capability in discerning complex patterns within genomic sequences indicative of thermostability. The integration of these models not only improved prediction accuracy but also provided insights into the critical determinants of enzyme stability, thereby supporting their broader industrial application. Our findings underscore the potential of machine learning in advancing enzyme engineering, with implications for enhancing industrial enzyme stability.
漆酶作为多铜氧化酶,在多种底物的氧化过程中发挥着关键作用,影响着众多生物功能和工业过程。然而,它们在工业上的应用受到热稳定性方面挑战的限制。本研究采用了先进的计算模型,包括随机森林(RF)回归器和卷积神经网络(CNN),来预测和提高漆酶的热稳定性。最初,RF模型估计的解链温度训练均方误差(MSE)为13.98,虽然其训练准确率较高(93.01%),但测试和验证的MSE分别为48.81和58.42,表明该模型存在优化空间。CNN模型进一步优化了这些预测,实现了更低的训练和验证MSE,从而证明其在识别基因组序列中指示热稳定性的复杂模式方面具有更强的能力。这些模型的整合不仅提高了预测准确性,还为酶稳定性的关键决定因素提供了见解,从而支持它们在更广泛的工业中的应用。我们的研究结果强调了机器学习在推进酶工程方面的潜力,对提高工业酶稳定性具有重要意义。