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精准热稳定性预测:利用机器学习研究漆酶及其相关基因

Precision Thermostability Predictions: Leveraging Machine Learning for Examining Laccases and Their Associated Genes.

作者信息

Tiwari Ashutosh, Krisnawati Dyah Ika, Cheng Tsai-Mu, Kuo Tsung-Rong

机构信息

International Ph.D. Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei 11031, Taiwan.

Department of Nursing, Faculty of Nursing and Midwifery, Universitas Nahdlatul Ulama Surabaya, Surabaya 60237, East Java, Indonesia.

出版信息

Int J Mol Sci. 2024 Dec 4;25(23):13035. doi: 10.3390/ijms252313035.

DOI:10.3390/ijms252313035
PMID:39684743
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11641568/
Abstract

Laccases, multi-copper oxidases, play pivotal roles in the oxidation of a variety of substrates, impacting numerous biological functions and industrial processes. However, their industrial adoption has been limited by challenges in thermostability. This study employed advanced computational models, including random forest (RF) regressors and convolutional neural networks (CNNs), to predict and enhance the thermostability of laccases. Initially, the RF model estimated melting temperatures with a training mean squared error (MSE) of 13.98, and while it demonstrated high training accuracy (93.01%), the test and validation MSEs of 48.81 and 58.42, respectively, indicated areas for model optimization. The CNN model further refined these predictions, achieving lower training and validation MSEs, thus demonstrating enhanced capability in discerning complex patterns within genomic sequences indicative of thermostability. The integration of these models not only improved prediction accuracy but also provided insights into the critical determinants of enzyme stability, thereby supporting their broader industrial application. Our findings underscore the potential of machine learning in advancing enzyme engineering, with implications for enhancing industrial enzyme stability.

摘要

漆酶作为多铜氧化酶,在多种底物的氧化过程中发挥着关键作用,影响着众多生物功能和工业过程。然而,它们在工业上的应用受到热稳定性方面挑战的限制。本研究采用了先进的计算模型,包括随机森林(RF)回归器和卷积神经网络(CNN),来预测和提高漆酶的热稳定性。最初,RF模型估计的解链温度训练均方误差(MSE)为13.98,虽然其训练准确率较高(93.01%),但测试和验证的MSE分别为48.81和58.42,表明该模型存在优化空间。CNN模型进一步优化了这些预测,实现了更低的训练和验证MSE,从而证明其在识别基因组序列中指示热稳定性的复杂模式方面具有更强的能力。这些模型的整合不仅提高了预测准确性,还为酶稳定性的关键决定因素提供了见解,从而支持它们在更广泛的工业中的应用。我们的研究结果强调了机器学习在推进酶工程方面的潜力,对提高工业酶稳定性具有重要意义。

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本文引用的文献

1
Structural Insight into the Amino Acid Environment of the Two-Domain Laccase's Trinuclear Copper Cluster.二域漆酶三核铜簇氨基酸环境的结构洞察。
Int J Mol Sci. 2023 Jul 25;24(15):11909. doi: 10.3390/ijms241511909.
2
A computational approach to optimising laccase-mediated polyethylene oxidation through carbohydrate-binding module fusion.通过糖基结合模块融合优化漆酶介导的聚乙烯氧化的计算方法。
BMC Biotechnol. 2023 Jul 6;23(1):18. doi: 10.1186/s12896-023-00787-5.
3
Enzyme Immobilization Technologies and Industrial Applications.
酶固定化技术及其工业应用
ACS Omega. 2023 Jan 31;8(6):5184-5196. doi: 10.1021/acsomega.2c07560. eCollection 2023 Feb 14.
4
Laccase: A potential biocatalyst for pollutant degradation.漆酶:一种用于污染物降解的潜在生物催化剂。
Environ Pollut. 2023 Feb 15;319:120999. doi: 10.1016/j.envpol.2023.120999. Epub 2023 Jan 3.
5
On Aromaticity of the Aromatic α-Amino Acids and Tuning of the NICS Indices to Find the Aromaticity Order.芳香族 α-氨基酸的芳香性和调整 NICS 指标以确定芳香性顺序。
J Phys Chem A. 2022 Jun 9;126(22):3433-3444. doi: 10.1021/acs.jpca.2c00346. Epub 2022 May 26.
6
Single amino acid bionanozyme for environmental remediation.用于环境修复的单氨基酸生物纳米酶。
Nat Commun. 2022 Mar 21;13(1):1505. doi: 10.1038/s41467-022-28942-0.
7
Overview of strategies for developing high thermostability industrial enzymes: Discovery, mechanism, modification and challenges.高温稳定性工业酶的开发策略概述:发现、机制、修饰及挑战。
Crit Rev Food Sci Nutr. 2023;63(14):2057-2073. doi: 10.1080/10408398.2021.1970508. Epub 2021 Aug 26.
8
Mutations in the coordination spheres of T1 Cu affect Cu-activation of the laccase from Thermus thermophilus.配位球中 T1Cu 的突变影响嗜热高温菌漆酶的铜激活。
Biochimie. 2021 Mar;182:228-237. doi: 10.1016/j.biochi.2021.01.006. Epub 2021 Jan 31.
9
Ancestral Resurrection and Directed Evolution of Fungal Mesozoic Laccases.真菌中生代漆酶的祖先复活和定向进化。
Appl Environ Microbiol. 2020 Jul 2;86(14). doi: 10.1128/AEM.00778-20.
10
Ligninolytic enzymes and its mechanisms for degradation of lignocellulosic waste in environment.木质素分解酶及其在环境中降解木质纤维素废物的机制。
Heliyon. 2020 Feb 19;6(2):e03170. doi: 10.1016/j.heliyon.2020.e03170. eCollection 2020 Feb.