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解析小型漆酶复杂的顺磁核磁共振(NMR)谱:将共振峰归属到特定残基的原子核

Towards resolving the complex paramagnetic nuclear magnetic resonance (NMR) spectrum of small laccase: assignments of resonances to residue-specific nuclei.

作者信息

Dasgupta Rubin, Gupta Karthick B S S, de Groot Huub J M, Ubbink Marcellus

机构信息

Leiden Institute of Chemistry, University of Leiden, Gorlaeus Laboratory, Einsteinweg 55, 2333 CC, Leiden, the Netherlands.

出版信息

Magn Reson (Gott). 2021 Jan 29;2(1):15-23. doi: 10.5194/mr-2-15-2021. eCollection 2021.

Abstract

Laccases efficiently reduce dioxygen to water in an active site containing a tri-nuclear copper centre (TNC). The dynamics of the protein matrix is a determining factor in the efficiency in catalysis. To probe mobility, nuclear magnetic resonance (NMR) spectroscopy is highly suitable. However, several factors complicate the assignment of resonances to active site nuclei in laccases. The paramagnetic nature causes large shifts and line broadening. Furthermore, the presence of slow chemical exchange processes of the imidazole rings of copper ligand results in peak doubling. A third complicating factor is that the enzyme occurs in two states, the native intermediate (NI) and resting oxidized (RO) states, with different paramagnetic properties. The present study aims at resolving the complex paramagnetic NMR spectra of the TNC of small laccase (SLAC). With a combination of paramagnetically tailored NMR experiments, all eight His N1 and H1 resonances for the NI state are identified, as well as His H protons for the RO state. With the help of second-shell mutagenesis, selective resonances are tentatively assigned to the histidine ligands of the copper in the type-2 site. This study demonstrates the utility of the approaches used for the sequence-specific assignment of the paramagnetic NMR spectra of ligands in the TNC that ultimately may lead to a description of the underlying motion.

摘要

漆酶能在含有三核铜中心(TNC)的活性位点高效地将双氧还原为水。蛋白质基质的动力学是催化效率的决定因素。为了探究流动性,核磁共振(NMR)光谱法非常适用。然而,有几个因素使漆酶活性位点原子核的共振峰归属变得复杂。顺磁性质会导致大幅位移和谱线展宽。此外,铜配体咪唑环的缓慢化学交换过程会导致峰加倍。第三个复杂因素是该酶以两种状态存在,即天然中间体(NI)和静止氧化态(RO),具有不同的顺磁性质。本研究旨在解析小型漆酶(SLAC)的TNC的复杂顺磁NMR光谱。通过结合顺磁定制的NMR实验,鉴定出了NI态的所有八个组氨酸N1和H1共振峰,以及RO态的组氨酸H质子。借助二级位点诱变,初步将选择性共振峰归属到2型位点铜的组氨酸配体上。本研究证明了所采用的方法对于TNC中配体顺磁NMR光谱进行序列特异性归属的实用性,这最终可能会促成对潜在运动的描述。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b66e/10539750/a69121618e57/mr-2-15-g01.jpg

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