Mo Xiaocong, Yuan Kaisheng, Hu Di, Huang Cheng, Luo Juyu, Liu Hang, Li Yin
Department of Oncology, the First Affiliated Hospital of Jinan University, Jinan University, Guangdong, Guangzhou, China.
Department of Metabolic and Bariatric Surgery, the First Affiliated Hospital of Jinan University, Jinan University, Guangdong, Guangzhou, China.
Front Oncol. 2023 Jul 31;13:1179212. doi: 10.3389/fonc.2023.1179212. eCollection 2023.
To investigate potential diagnostic and prognostic biomarkers associated with prostate cancer (PCa), we obtained gene expression data from six datasets in the Gene Expression Omnibus (GEO) database. The datasets included 127 PCa cases and 52 normal controls. We filtered for differentially expressed genes (DEGs) and identified candidate PCa biomarkers using a least absolute shrinkage and selector operation (LASSO) regression model and support vector machine recursive feature elimination (SVM-RFE) analyses. A difference analysis was conducted on these genes in the test group. The discriminating ability of the train group was determined using the area under the receiver operating characteristic curve (AUC) value, with hub genes defined as those having an AUC greater than 85%. The expression levels and diagnostic utility of the biomarkers in PCa were further confirmed in the GSE69223 and GSE71016 datasets. Finally, the invasion of cells per sample was assessed using the CIBERSORT algorithm and the ESTIMATE technique. The possible prostate cancer (PCa) diagnostic biomarkers AOX1, APOC1, ARMCX1, FLRT3, GSTM2, and HPN were identified and validated using the GSE69223 and GSE71016 datasets. Among these biomarkers, AOX1 was found to be associated with oxidative stress and could potentially serve as a prognostic biomarker. Experimental validations showed that AOX1 expression was low in PCa cell lines. Overexpression of AOX1 significantly reduced the proliferation and migration of PCa cells, suggesting that the anti-tumor effect of AOX1 may be attributed to its impact on oxidative stress. Our study employed a comprehensive approach to identify PCa biomarkers and investigate the role of cell infiltration in PCa.
为了研究与前列腺癌(PCa)相关的潜在诊断和预后生物标志物,我们从基因表达综合数据库(GEO)中的六个数据集中获取了基因表达数据。这些数据集包括127例PCa病例和52例正常对照。我们筛选了差异表达基因(DEGs),并使用最小绝对收缩和选择算子(LASSO)回归模型以及支持向量机递归特征消除(SVM-RFE)分析来识别候选PCa生物标志物。对测试组中的这些基因进行了差异分析。使用受试者工作特征曲线(AUC)下的面积值来确定训练组的鉴别能力,将枢纽基因定义为AUC大于85%的基因。在GSE69223和GSE71016数据集中进一步证实PCa中生物标志物的表达水平和诊断效用。最后,使用CIBERSORT算法和ESTIMATE技术评估每个样本中细胞的侵袭情况。使用GSE69223和GSE71016数据集鉴定并验证了可能的前列腺癌(PCa)诊断生物标志物AOX1、APOC1、ARMCX1、FLRT3、GSTM2和HPN。在这些生物标志物中,发现AOX1与氧化应激相关,并且可能作为一种预后生物标志物。实验验证表明,AOX1在PCa细胞系中的表达较低。AOX1的过表达显著降低了PCa细胞的增殖和迁移,这表明AOX1的抗肿瘤作用可能归因于其对氧化应激的影响。我们的研究采用了一种综合方法来识别PCa生物标志物并研究细胞浸润在PCa中的作用。