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在一个古海洋模拟环境中发现了一类具有驱动硫循环和微生物群落结构能力的新型细菌。

Discovery of a novel bacterial class with the capacity to drive sulfur cycling and microbiome structure in a paleo-ocean analog.

作者信息

Vigneron Adrien, Vincent Warwick F, Lovejoy Connie

机构信息

Département de Biologie, Université Laval, Québec, QC, Canada.

Centre d'études nordiques (CEN), Université Laval, Québec, QC, Canada.

出版信息

ISME Commun. 2023 Aug 18;3(1):82. doi: 10.1038/s43705-023-00287-9.

Abstract

Uncultivated microbial taxa represent a large fraction of global microbial diversity and likely drive numerous biogeochemical transformations in natural ecosystems. Geographically isolated, polar ecosystems are complex microbial biomes and refuges of underexplored taxonomic and functional biodiversity. Combining amplicon sequencing with genome-centric metagenomic analysis of samples from one of the world's northernmost lakes (Lake A, Ellesmere Island, Canadian High Arctic), we identified a novel bacterial taxon that dominates in the bottom layer of anoxic, sulfidic, relict sea water that was isolated from the Arctic Ocean some 3000 years ago. Based on phylogenomic comparative analyses, we propose that these bacteria represent a new Class within the poorly described Electryoneota/AABM5-125-24 candidate phylum. This novel class, for which we propose the name Tariuqbacteria, may be either a relict of ancient ocean conditions or endemic to this High Arctic system, provisionally providing a rare example of high-taxonomy level endemism. Consistent with the geochemistry of the bottom water, the genetic composition of the Candidatus Tariuqbacter genome revealed a strictly anaerobic lifestyle with the potential for sulfate and sulfur reduction, a versatile carbon metabolism and the capability to eliminate competing bacteria through methylarsenite production, suggesting an allelochemical influence on microbiome structure by this planktonic microbe.

摘要

未培养的微生物类群占全球微生物多样性的很大一部分,并且可能推动自然生态系统中的众多生物地球化学转化。极地生态系统地理位置孤立,是复杂的微生物群落,也是尚未充分探索的分类学和功能生物多样性的避难所。我们将扩增子测序与对世界最北部湖泊之一(加拿大北极地区埃尔斯米尔岛的A湖)的样本进行的以基因组为中心的宏基因组分析相结合,鉴定出一个新的细菌类群,该类群在约3000年前从北冰洋分离出来的缺氧、含硫的残留海水中的底层占主导地位。基于系统基因组比较分析,我们提出这些细菌代表了描述较少的电杆菌纲/ AABM5 - 125 - 24候选门内的一个新纲。我们提议将这个新纲命名为塔留克菌纲,它可能是古代海洋条件的遗留物,也可能是这个北极高纬度系统特有的,暂时提供了一个高分类水平特有性的罕见例子。与底层水的地球化学一致,候选塔留克菌基因组的遗传组成揭示了一种严格厌氧的生活方式,具有硫酸盐和硫还原的潜力、多功能的碳代谢以及通过产生亚甲基胂来消除竞争细菌的能力,这表明这种浮游微生物对微生物群落结构有化感作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d366/10439189/fbc8477a2675/43705_2023_287_Fig1_HTML.jpg

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