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本文引用的文献

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Proteins. 2021 Dec;89(12):1607-1617. doi: 10.1002/prot.26237. Epub 2021 Oct 7.
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J Am Med Inform Assoc. 2020 Jul 1;27(9):1383-1392. doi: 10.1093/jamia/ocaa113.
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Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction.通过患者死亡率预测,引导一种模型到数据的方法,以实现医疗保健领域的预测分析。
J Am Med Inform Assoc. 2020 Jul 1;27(9):1393-1400. doi: 10.1093/jamia/ocaa083.
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A Review of Challenges and Opportunities in Machine Learning for Health.机器学习在健康领域的挑战与机遇综述。
AMIA Jt Summits Transl Sci Proc. 2020 May 30;2020:191-200. eCollection 2020.
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.CAFA 挑战赛报告称,通过实验筛选,提高了数百个基因的蛋白质功能预测和新的功能注释。
Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.
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Dissecting racial bias in an algorithm used to manage the health of populations.剖析用于管理人群健康的算法中的种族偏见。
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Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation.来自第五版 CAGI 的报告:基因组解读的关键评估。
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Scalable and accurate deep learning with electronic health records.借助电子健康记录实现可扩展且准确的深度学习。
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Prediction of premature all-cause mortality: A prospective general population cohort study comparing machine-learning and standard epidemiological approaches.预测全因过早死亡:一项比较机器学习和标准流行病学方法的前瞻性一般人群队列研究。
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Alternative models for sharing confidential biomedical data.共享机密生物医学数据的替代模式。
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评估众包死亡率预测模型作为评估医学人工智能的框架。

Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine.

机构信息

Sage Bionetworks, Seattle, WA, United States.

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, United States.

出版信息

J Am Med Inform Assoc. 2023 Dec 22;31(1):35-44. doi: 10.1093/jamia/ocad159.

DOI:10.1093/jamia/ocad159
PMID:37604111
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10746301/
Abstract

OBJECTIVE

Applications of machine learning in healthcare are of high interest and have the potential to improve patient care. Yet, the real-world accuracy of these models in clinical practice and on different patient subpopulations remains unclear. To address these important questions, we hosted a community challenge to evaluate methods that predict healthcare outcomes. We focused on the prediction of all-cause mortality as the community challenge question.

MATERIALS AND METHODS

Using a Model-to-Data framework, 345 registered participants, coalescing into 25 independent teams, spread over 3 continents and 10 countries, generated 25 accurate models all trained on a dataset of over 1.1 million patients and evaluated on patients prospectively collected over a 1-year observation of a large health system.

RESULTS

The top performing team achieved a final area under the receiver operator curve of 0.947 (95% CI, 0.942-0.951) and an area under the precision-recall curve of 0.487 (95% CI, 0.458-0.499) on a prospectively collected patient cohort.

DISCUSSION

Post hoc analysis after the challenge revealed that models differ in accuracy on subpopulations, delineated by race or gender, even when they are trained on the same data.

CONCLUSION

This is the largest community challenge focused on the evaluation of state-of-the-art machine learning methods in a healthcare system performed to date, revealing both opportunities and pitfalls of clinical AI.

摘要

目的

机器学习在医疗保健领域的应用备受关注,具有改善患者护理的潜力。然而,这些模型在临床实践和不同患者亚群中的实际准确性尚不清楚。为了解决这些重要问题,我们举办了一场社区挑战赛,以评估预测医疗保健结果的方法。我们将预测全因死亡率作为社区挑战赛的问题。

材料和方法

使用模型到数据框架,345 名注册参与者,凝聚成 25 个独立团队,分布在 3 个大洲和 10 个国家,在一个超过 110 万患者的数据集上训练了 25 个准确的模型,并在一个大型医疗系统的为期 1 年的前瞻性患者观察中对这些模型进行了评估。

结果

表现最佳的团队在一个前瞻性收集的患者队列上获得了最终的接收器操作曲线下面积为 0.947(95%置信区间,0.942-0.951)和精度-召回曲线下面积为 0.487(95%置信区间,0.458-0.499)。

讨论

挑战赛结束后的事后分析表明,即使使用相同的数据进行训练,模型在种族或性别等亚群中的准确性也存在差异。

结论

这是迄今为止在医疗保健系统中评估最先进的机器学习方法的最大规模社区挑战赛,揭示了临床人工智能的机遇和陷阱。