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Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum.

作者信息

Alshehri Wafa A, Abulfaraj Aala A, Alqahtani Mashael D, Alomran Maryam M, Alotaibi Nahaa M, Alwutayd Khairiah, Aloufi Abeer S, Alshehrei Fatimah M, Alabbosh Khulood F, Alshareef Sahar A, Ashy Ruba A, Refai Mohammed Y, Jalal Rewaa S

机构信息

Department of Biology, College of Science, University of Jeddah, 21493, Jeddah, Saudi Arabia.

Biological Sciences Department, College of Science & Arts, King Abdulaziz University, 21911, Rabigh, Saudi Arabia.

出版信息

AMB Express. 2023 Aug 30;13(1):92. doi: 10.1186/s13568-023-01597-w.


DOI:10.1186/s13568-023-01597-w
PMID:37646836
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10469157/
Abstract

A metagenomic whole genome shotgun sequencing approach was used for rhizospheric soil micribiome of the wild plant Abutilon fruticosum in order to detect antibiotic resistance genes (ARGs) along with their antibiotic resistance mechanisms and to detect potential risk of these ARGs to human health upon transfer to clinical isolates. The study emphasized the potential risk to human health of such human pathogenic or commensal bacteria, being transferred via food chain or horizontally transferred to human clinical isolates. The top highly abundant rhizospheric soil non-redundant ARGs that are prevalent in bacterial human pathogens or colonizers (commensal) included mtrA, soxR, vanRO, golS, rbpA, kdpE, rpoB2, arr-1, efrA and ileS genes. Human pathogenic/colonizer bacteria existing in this soil rhizosphere included members of genera Mycobacterium, Vibrio, Klebsiella, Stenotrophomonas, Pseudomonas, Nocardia, Salmonella, Escherichia, Citrobacter, Serratia, Shigella, Cronobacter and Bifidobacterium. These bacteria belong to phyla Actinobacteria and Proteobacteria. The most highly abundant resistance mechanisms included antibiotic efflux pump, antibiotic target alteration, antibiotic target protection and antibiotic inactivation. antimicrobial resistance (AMR) families of the resistance mechanism of antibiotic efflux pump included resistance-nodulation-cell division (RND) antibiotic efflux pump (for mtrA, soxR and golS genes), major facilitator superfamily (MFS) antibiotic efflux pump (for soxR gene), the two-component regulatory kdpDE system (for kdpE gene) and ATP-binding cassette (ABC) antibiotic efflux pump (for efrA gene). AMR families of the resistance mechanism of antibiotic target alteration included glycopeptide resistance gene cluster (for vanRO gene), rifamycin-resistant beta-subunit of RNA polymerase (for rpoB2 gene) and antibiotic-resistant isoleucyl-tRNA synthetase (for ileS gene). AMR families of the resistance mechanism of antibiotic target protection included bacterial RNA polymerase-binding protein (for RbpA gene), while those of the resistance mechanism of antibiotic inactivation included rifampin ADP-ribosyltransferase (for arr-1 gene). Better agricultural and food transport practices are required especially for edible plant parts or those used in folkloric medicine.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/f0d525eb2e26/13568_2023_1597_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/e359eebb7972/13568_2023_1597_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/c84fca145310/13568_2023_1597_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/44e51bb9d13d/13568_2023_1597_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/452d6f81e03c/13568_2023_1597_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/71b7369b7861/13568_2023_1597_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/1c969404b88a/13568_2023_1597_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/f5f39df44786/13568_2023_1597_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/f0d525eb2e26/13568_2023_1597_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/e359eebb7972/13568_2023_1597_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/c84fca145310/13568_2023_1597_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/44e51bb9d13d/13568_2023_1597_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/452d6f81e03c/13568_2023_1597_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/71b7369b7861/13568_2023_1597_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/1c969404b88a/13568_2023_1597_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/f5f39df44786/13568_2023_1597_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8500/10469157/f0d525eb2e26/13568_2023_1597_Fig8_HTML.jpg

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Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum.

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引用本文的文献

[1]
Crop rotation complexity affects soil properties shaping antibiotic resistance gene types and resistance mechanisms.

Front Microbiol. 2025-6-25

[2]
Resistome Signature and Antibiotic Resistance Mechanisms in Rhizospheric Soil Bacteriomes of Mecca Region, Saudi Arabia: Insights into Impact on Human Health.

Life (Basel). 2024-7-24

[3]
Correction: Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum.

AMB Express. 2023-9-27

本文引用的文献

[1]
Distribution Patterns of Antibiotic Resistance Genes and Their Bacterial Hosts in a Manure Lagoon of a Large-Scale Swine Finishing Facility.

Microorganisms. 2022-11-20

[2]
The Roles of the Two-Component System, MtrAB, in Response to Diverse Cell Envelope Stresses in sp. DQ12-45-1b.

Appl Environ Microbiol. 2022-10-26

[3]
Genomic epidemiology of rifampicin ADP-ribosyltransferase (Arr) in the Bacteria domain.

Sci Rep. 2021-10-5

[4]
Overexpression of Efflux Pumps Mediate Pan Resistance of Sequence Type 11.

Microb Drug Resist. 2021-10

[5]
Complete Chloroplast Genome of : Genome Structure, Comparative and Phylogenetic Analysis.

Plants (Basel). 2021-1-30

[6]
Plasmid-Mediated AmpC β-Lactamase and Genes Among Gram-Negative Clinical Isolates.

Infect Drug Resist. 2020-11-24

[7]
Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance.

ISME J. 2021-3

[8]
Target protection as a key antibiotic resistance mechanism.

Nat Rev Microbiol. 2020-11

[9]
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes.

Genes (Basel). 2019-6-3

[10]
Roles of two-component regulatory systems in antibiotic resistance.

Future Microbiol. 2019-5-8

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