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短朊病毒肽形成的淀粉样纤维是金属酶。

Amyloid Fibrils Formed by Short Prion-Inspired Peptides Are Metalloenzymes.

机构信息

Institut de Biotecnologia i de Biomedicina (IBB) and Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain.

Basque Research and Technology Alliance (BRTA), Center for Cooperative Research in Biosciences (CIC bioGUNE), 48160 Derio, Spain.

出版信息

ACS Nano. 2023 Sep 12;17(17):16968-16979. doi: 10.1021/acsnano.3c04164. Epub 2023 Aug 30.

DOI:10.1021/acsnano.3c04164
PMID:37647583
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10510724/
Abstract

Enzymes typically fold into defined 3D protein structures exhibiting a high catalytic efficiency and selectivity. It has been proposed that the earliest enzymes may have arisen from the self-assembly of short peptides into supramolecular amyloid-like structures. Several artificial amyloids have been shown to display catalytic activity while offering advantages over natural enzymes in terms of modularity, flexibility, stability, and reusability. Hydrolases, especially esterases, are the most common artificial amyloid-like nanozymes with some reported to act as carbonic anhydrases (CA). Their hydrolytic activity is often dependent on the binding of metallic cofactors through a coordination triad composed of His residues in the β-strands, which mimic the arrangement found in natural metalloenzymes. Tyr residues contribute to the coordination of metal ions in the active center of metalloproteins; however, their use has been mostly neglected in the design of metal-containing amyloid-based nanozymes. We recently reported that four different polar prion-inspired heptapeptides spontaneously self-assembled into amyloid fibrils. Their sequences lack His but contain three alternate Tyr residues exposed to solvent. We combine experiments and simulations to demonstrate that the amyloid fibrils formed by these peptides can efficiently coordinate and retain different divalent metal cations, functioning as both metal scavengers and nanozymes. The metallized fibrils exhibit esterase and CA activities without the need for a histidine triad. These findings highlight the functional versatility of prion-inspired peptide assemblies and provide a new sequential context for the creation of artificial metalloenzymes. Furthermore, our data support amyloid-like structures acting as ancestral catalysts at the origin of life.

摘要

酶通常折叠成具有高催化效率和选择性的特定 3D 蛋白质结构。有人提出,最早的酶可能是由短肽自组装成超分子淀粉样结构而产生的。已经证明,一些人工淀粉样体具有催化活性,并且在模块性、灵活性、稳定性和可重复使用性方面优于天然酶。水解酶,特别是酯酶,是最常见的人工类似淀粉样纳米酶,其中一些被报道具有碳酸酐酶(CA)的作用。它们的水解活性通常依赖于通过由β-折叠中的 His 残基组成的配位三联体与金属辅因子的结合,这种排列方式模拟了天然金属酶中的排列方式。Tyr 残基有助于金属离子在金属蛋白酶活性中心的配位;然而,在含金属的淀粉样纳米酶的设计中,它们的使用大多被忽视。我们最近报道了四个不同的极性朊病毒启发的七肽自发组装成淀粉样纤维。它们的序列缺乏 His,但含有三个暴露在溶剂中的交替 Tyr 残基。我们结合实验和模拟证明,这些肽形成的淀粉样纤维可以有效地配位和保留不同的二价金属阳离子,充当金属清除剂和纳米酶。金属化纤维表现出酯酶和 CA 活性,而不需要组氨酸三联体。这些发现突出了朊病毒启发肽组装的多功能性,并为人工金属酶的创建提供了新的序列背景。此外,我们的数据支持淀粉样结构作为生命起源的原始催化剂发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/ee33aa942c43/nn3c04164_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/04f248b069c5/nn3c04164_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/550338fa32de/nn3c04164_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/7bfec8618b0b/nn3c04164_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/4370245ef270/nn3c04164_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/d7f37909e2cb/nn3c04164_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/ee33aa942c43/nn3c04164_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/04f248b069c5/nn3c04164_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/550338fa32de/nn3c04164_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/7bfec8618b0b/nn3c04164_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/4370245ef270/nn3c04164_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/d7f37909e2cb/nn3c04164_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e386/10510724/ee33aa942c43/nn3c04164_0006.jpg

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