Zou Jie, Ma Guangxin, Lu Fei, Li Jie, Ji Chunyan
Hematology and Oncology Unit, Department of Geriatrics, Qilu Hospital, Shandong University, Jinan, China.
Department of Hematology, Qilu Hospital, Shandong University, Jinan, China.
J Cancer. 2023 Aug 6;14(13):2517-2528. doi: 10.7150/jca.86681. eCollection 2023.
As a regulatory unit of class III phosphoinositide 3-kinase (PI3K), PIK3R4 is an important molecule involved in several malignant tumours, but the role and molecular mechanism of PIK3R4 in diffuse large B-cell lymphoma (DLBCL) is still unclear. Multiple bioinformatics analyses were used to investigate the role and potential mechanisms of PIK3R4 in DLBCL. Quantitative real-time polymerase chain reaction (qRT‒PCR) was performed to determine the expression of PIK3R4 in 80 DLBCL patients, and the survival time of DLBCL patients grouped according to PIK3R4 mRNA expression was compared. PIK3R4 is up-regulated in several malignant tumours, including DLBCL. Bioinformatics analyses revealed that PIK3R4 exhibits prognostic value in DLBCL patients, and the upregulation of this gene in DLBCL samples was subsequently validated. In the functional category, GO analysis revealed that PIK3R4-related genes are enriched in ribosomal RNA metabolic process, the DNA damage response, mitochondrial gene expression, and nucleoside metabolic process. KEGG pathway analysis showed the enrichment of PIK3R4-related genes in the ribosome, oxidative phosphorylation, proteasome, and cellular senescence pathways. More importantly, the expression of PIK3R4 in DLBCL was correlated with the immune cell content in the cancer microenvironment, CD8(+) T-cell and neutrophil infiltration and the levels of several immune checkpoint molecules, including BTN3A2, BTN3A1, PRF1, CXCL9, PDCD1, and TIGIT. Our study demonstrated that PIK3R4, as a novel immune microenvironment-related gene, may represent an important diagnostic, prognostic, or therapeutic biomarker in DLBCL patients.
作为III类磷酸肌醇3激酶(PI3K)的调节单位,PIK3R4是参与多种恶性肿瘤的重要分子,但PIK3R4在弥漫性大B细胞淋巴瘤(DLBCL)中的作用和分子机制仍不清楚。本研究采用多种生物信息学分析方法,探讨PIK3R4在DLBCL中的作用及潜在机制。采用定量实时聚合酶链反应(qRT-PCR)检测80例DLBCL患者中PIK3R4的表达,并比较根据PIK3R4 mRNA表达分组的DLBCL患者的生存时间。PIK3R4在包括DLBCL在内的多种恶性肿瘤中上调。生物信息学分析显示,PIK3R4在DLBCL患者中具有预后价值,随后验证了该基因在DLBCL样本中的上调。在功能分类中,GO分析显示PIK3R4相关基因富集于核糖体RNA代谢过程、DNA损伤反应、线粒体基因表达和核苷代谢过程。KEGG通路分析显示PIK3R4相关基因在核糖体、氧化磷酸化、蛋白酶体和细胞衰老通路中富集。更重要的是,PIK3R4在DLBCL中的表达与癌症微环境中的免疫细胞含量、CD8(+) T细胞和中性粒细胞浸润以及包括BTN3A2、BTN3A1、PRF1、CXCL9、PDCD1和TIGIT在内的几种免疫检查点分子的水平相关。我们的研究表明,PIK3R4作为一种新型的免疫微环境相关基因,可能是DLBCL患者重要的诊断、预后或治疗生物标志物。