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植物科学中定向诱导基因组局部突变技术(TILLING)时代要结束了吗?

Is it the end of TILLING era in plant science?

作者信息

Szurman-Zubrzycka Miriam, Kurowska Marzena, Till Bradley J, Szarejko Iwona

机构信息

Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland.

Veterinary Genetics Laboratory, University of California, Davis, Davis, United States.

出版信息

Front Plant Sci. 2023 Aug 22;14:1160695. doi: 10.3389/fpls.2023.1160695. eCollection 2023.

Abstract

Since its introduction in 2000, the TILLING strategy has been widely used in plant research to create novel genetic diversity. TILLING is based on chemical or physical mutagenesis followed by the rapid identification of mutations within genes of interest. TILLING mutants may be used for functional analysis of genes and being nontransgenic, they may be directly used in pre-breeding programs. Nevertheless, classical mutagenesis is a random process, giving rise to mutations all over the genome. Therefore TILLING mutants carry background mutations, some of which may affect the phenotype and should be eliminated, which is often time-consuming. Recently, new strategies of targeted genome editing, including CRISPR/Cas9-based methods, have been developed and optimized for many plant species. These methods precisely target only genes of interest and produce very few off-targets. Thus, the question arises: is it the end of TILLING era in plant studies? In this review, we recap the basics of the TILLING strategy, summarize the current status of plant TILLING research and present recent TILLING achievements. Based on these reports, we conclude that TILLING still plays an important role in plant research as a valuable tool for generating genetic variation for genomics and breeding projects.

摘要

自2000年引入以来,定向诱导基因组局部突变(TILLING)策略已在植物研究中广泛用于创造新的遗传多样性。TILLING基于化学或物理诱变,随后快速鉴定目标基因内的突变。TILLING突变体可用于基因功能分析,并且由于它们是非转基因的,可直接用于预育种计划。然而,经典诱变是一个随机过程,会在整个基因组中产生突变。因此,TILLING突变体携带背景突变,其中一些可能影响表型,需要消除,这通常很耗时。最近,包括基于CRISPR/Cas9的方法在内的靶向基因组编辑新策略已针对许多植物物种进行了开发和优化。这些方法仅精确靶向目标基因,产生的脱靶效应极少。因此,问题来了:植物研究中TILLING时代是否即将结束?在本综述中,我们简述了TILLING策略的基础知识,总结了植物TILLING研究的现状,并展示了近期TILLING的成果。基于这些报告,我们得出结论,作为为基因组学和育种项目产生遗传变异的宝贵工具,TILLING在植物研究中仍发挥着重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4509/10477672/dc2f6f58f7e3/fpls-14-1160695-g001.jpg

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