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挖掘化学生物组学空间以预测药物-靶标相互作用。

Mining Chemogenomic Spaces for Prediction of Drug-Target Interactions.

机构信息

Department of Biochemistry, Pt. Jawahar Lal Nehru Memorial Medical College, Raipur, India.

Department of Zoology, Institute of Science, Banaras Hindu University, Varanasi, India.

出版信息

Methods Mol Biol. 2024;2714:155-169. doi: 10.1007/978-1-0716-3441-7_9.

DOI:10.1007/978-1-0716-3441-7_9
PMID:37676598
Abstract

The pipeline of drug discovery consists of a number of processes; drug-target interaction determination is one of the salient steps among them. Computational prediction of drug-target interactions can facilitate in reducing the search space of experimental wet lab-based verifications steps, thus considerably reducing time and other resources dedicated to the drug discovery pipeline. While machine learning-based methods are more widespread for drug-target interaction prediction, network-centric methods are also evolving. In this chapter, we focus on the process of the drug-target interaction prediction from the perspective of using machine learning algorithms and the various stages involved for developing an accurate predictor.

摘要

药物发现的流程包括多个环节;药物-靶点相互作用的确定是其中一个重要步骤。药物-靶点相互作用的计算预测可以帮助缩小基于实验湿实验室验证步骤的搜索空间,从而大大减少药物发现流程所需的时间和其他资源。虽然基于机器学习的方法在药物-靶点相互作用预测中更为广泛,但以网络为中心的方法也在不断发展。在本章中,我们从使用机器学习算法的角度关注药物-靶点相互作用预测的过程,以及开发准确预测器所涉及的各个阶段。

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Mining Chemogenomic Spaces for Prediction of Drug-Target Interactions.挖掘化学生物组学空间以预测药物-靶标相互作用。
Methods Mol Biol. 2024;2714:155-169. doi: 10.1007/978-1-0716-3441-7_9.
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A unified drug-target interaction prediction framework based on knowledge graph and recommendation system.基于知识图谱和推荐系统的药物-靶标相互作用预测统一框架。
Nat Commun. 2021 Nov 22;12(1):6775. doi: 10.1038/s41467-021-27137-3.
2
Prediction of Drug-Target Interactions by Combining Dual-Tree Complex Wavelet Transform with Ensemble Learning Method.基于复树小波变换与集成学习方法融合的药物-靶点相互作用预测
Molecules. 2021 Sep 3;26(17):5359. doi: 10.3390/molecules26175359.
3
Application of Machine Learning for Drug-Target Interaction Prediction.
机器学习在药物-靶点相互作用预测中的应用。
Front Genet. 2021 Jun 21;12:680117. doi: 10.3389/fgene.2021.680117. eCollection 2021.
4
An Introductory Review of Deep Learning for Prediction Models With Big Data.大数据预测模型的深度学习入门综述
Front Artif Intell. 2020 Feb 28;3:4. doi: 10.3389/frai.2020.00004. eCollection 2020.
5
Improved cytokine-receptor interaction prediction by exploiting the negative sample space.利用负样本空间提高细胞因子-受体相互作用预测
BMC Bioinformatics. 2020 Oct 31;21(1):493. doi: 10.1186/s12859-020-03835-5.
6
A representation transfer learning approach for enhanced prediction of growth hormone binding proteins.一种用于增强生长激素结合蛋白预测的表征迁移学习方法。
Comput Biol Chem. 2020 May 5;87:107274. doi: 10.1016/j.compbiolchem.2020.107274.
7
Drug-target interaction prediction with tree-ensemble learning and output space reconstruction.基于树集成学习和输出空间重构的药物-靶标相互作用预测。
BMC Bioinformatics. 2020 Feb 7;21(1):49. doi: 10.1186/s12859-020-3379-z.
8
Gradient Boosting Decision Tree-Based Method for Predicting Interactions Between Target Genes and Drugs.基于梯度提升决策树的靶基因与药物相互作用预测方法
Front Genet. 2019 May 31;10:459. doi: 10.3389/fgene.2019.00459. eCollection 2019.
9
A comprehensive review of feature based methods for drug target interaction prediction.基于特征的药物靶标相互作用预测方法的全面综述。
J Biomed Inform. 2019 May;93:103159. doi: 10.1016/j.jbi.2019.103159. Epub 2019 Mar 27.
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Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure.基于进化信息和化学结构的 Lasso 与随机森林预测药物-靶标相互作用。
Genomics. 2019 Dec;111(6):1839-1852. doi: 10.1016/j.ygeno.2018.12.007. Epub 2018 Dec 11.