William Harvey Research Institute, Barts and the London Faculty of Medicine and Dentistry, Queen Mary University of London, EC1M 6BQ London, UK; Institute of Cardiovascular Science, University College London, London, UK; Nuffield Department of Population Health, University of Oxford, Oxford, UK.
William Harvey Research Institute, Barts and the London Faculty of Medicine and Dentistry, Queen Mary University of London, EC1M 6BQ London, UK; Aragon Institute of Engineering Research, University of Zaragoza, Zaragoza, Spain; Centro de Investigación Biomédica en Red - Bioingeniería, Biomateriales y Nanomedicina, Zaragoza, Spain.
Am J Hum Genet. 2023 Oct 5;110(10):1718-1734. doi: 10.1016/j.ajhg.2023.08.009. Epub 2023 Sep 7.
Genome-wide association studies of blood pressure (BP) have identified >1,000 loci, but the effector genes and biological pathways at these loci are mostly unknown. Using published association summary statistics, we conducted annotation-informed fine-mapping incorporating tissue-specific chromatin segmentation and colocalization to identify causal variants and candidate effector genes for systolic BP, diastolic BP, and pulse pressure. We observed 532 distinct signals associated with ≥2 BP traits and 84 with all three. For >20% of signals, a single variant accounted for >75% posterior probability, 65 were missense variants in known (SLC39A8, ADRB2, and DBH) and previously unreported BP candidate genes (NRIP1 and MMP14). In disease-relevant tissues, we colocalized >80 and >400 distinct signals for each BP trait with cis-eQTLs and regulatory regions from promoter capture Hi-C, respectively. Integrating mouse, human disorder, gene expression and tissue abundance data, and literature review, we provide consolidated evidence for 436 BP candidate genes for future functional validation and discover several potential drug targets.
全基因组关联研究已经鉴定出超过 1000 个与血压(BP)相关的位点,但这些位点的效应基因和生物学途径大多未知。我们使用已发表的关联汇总统计数据,进行了注释指导的精细映射,包括组织特异性染色质分割和共定位,以确定收缩压、舒张压和脉压的因果变异和候选效应基因。我们观察到 532 个与≥2 个 BP 特征相关的独特信号,以及 84 个与所有 3 个特征相关的独特信号。对于超过 20%的信号,一个单一的变异体解释了超过 75%的后验概率,65 个是在已知(SLC39A8、ADRB2 和 DBH)和以前未报道的 BP 候选基因(NRIP1 和 MMP14)中的错义变异体。在疾病相关组织中,我们分别与 cis-eQTLs 和启动子捕获 Hi-C 的调控区域共定位了超过 80 和超过 400 个与每个 BP 特征相关的独特信号。我们整合了小鼠、人类疾病、基因表达和组织丰度数据,并进行了文献综述,为 436 个 BP 候选基因提供了综合证据,以进行未来的功能验证,并发现了几个潜在的药物靶点。