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黄瓜转化酶及其抑制剂基因的全基因组鉴定和表达模式。

Genome-Wide Identification and Expression Patterns of Cucumber Invertases and Their Inhibitor Genes.

机构信息

College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China.

Joint International Research Laboratory of Agriculture and Agri-Product Safety, Ministry of Education of China, Yangzhou University, Yangzhou 225009, China.

出版信息

Int J Mol Sci. 2023 Aug 30;24(17):13421. doi: 10.3390/ijms241713421.

Abstract

Invertases and their inhibitors play important roles in sucrose metabolism, growth and development, signal transduction, and biotic and abiotic stress tolerance in many plant species. However, in cucumber, both the gene members and functions of invertase and its inhibitor families remain largely unclear. In this study, in comparison with the orthologues of (watermelon), (melon), and (Arabidopsis), 12 invertase genes and 12 invertase inhibitor genes were identified from the genome of (cucumber). Among them, the 12 invertase genes were classified as 4 cell wall invertases, 6 cytoplasmic invertases, and 2 vacuolar invertases. Most invertase genes were conserved in cucumber, melon, and watermelon, with several duplicate genes in melon and watermelon. Transcriptome analysis distinguished these genes into various expression patterns, which included genes and , which were significantly expressed in different tissues, organs, and development stages, and genes and , which might be involved in biotic and abiotic stress. Six genes were further validated in cucumber based on quantitative real-time PCR (qRT-PCR), and three of them showed consistent expression patterns as revealed in the transcriptome. These results provide important information for further studies on the physiological functions of cucumber invertases () and their inhibitors ().

摘要

在许多植物物种中,转化酶及其抑制剂在蔗糖代谢、生长发育、信号转导以及生物和非生物胁迫耐受中发挥着重要作用。然而,在黄瓜中,转化酶及其抑制剂家族的基因成员和功能仍在很大程度上不明确。在这项研究中,与 (西瓜)、 (甜瓜)和 (拟南芥)的同源物相比,从 (黄瓜)基因组中鉴定出了 12 个转化酶基因和 12 个转化酶抑制剂基因。其中,12 个转化酶基因被分为 4 个细胞壁转化酶、6 个细胞质转化酶和 2 个液泡转化酶。大多数转化酶基因在黄瓜、甜瓜和西瓜中保守,而在甜瓜和西瓜中有几个重复基因。转录组分析将这些基因分为不同的表达模式,包括在不同组织、器官和发育阶段显著表达的基因 和 ,以及可能参与生物和非生物胁迫的基因 和 。根据定量实时 PCR (qRT-PCR) 在黄瓜中进一步验证了 6 个基因,其中 3 个基因的表达模式与转录组结果一致。这些结果为进一步研究黄瓜转化酶()及其抑制剂()的生理功能提供了重要信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c744/10487868/72509fd6dacc/ijms-24-13421-g001.jpg

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