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葫芦科基因家族的全基因组鉴定及其在黄瓜(L.)中的表达分析。

Genome-Wide Identification of Gene Family in Cucurbitaceae and Expression Analysis in Cucumber ( L.).

机构信息

Engineering Research Center of Breeding and Propagation of Horticultural Crops, Ministry on Education, College of Horticulture, China Agricultural University, Beijing 100193, China.

College of Ocean and Agricultural Engineering, Yantai Institute of China Agricultural University, Yantai 264670, China.

出版信息

Genes (Basel). 2022 Mar 7;13(3):467. doi: 10.3390/genes13030467.

Abstract

YABBY transcription factors play important roles in plant growth and development. However, little is known about genes in Cucurbitaceae. Here, we identified 59 genes from eight cucurbit species, including cucumber (. L.), melon ( L.), watermelon (), wax gourd (), pumpkin (), zucchini ( L.), silver-seed gourd (), and bottle gourd (). The 59 genes were clustered into five subfamilies wherein the gene structures and motifs are conserved, suggesting similar functions within each subfamily. Different gene numbers in eight cucurbit species indicated that gene loss or duplication events exist in an evolutionary process across Cucurbitaceae. The -acting elements analysis implied that the may be involved in plant development, and phytohormone, stress, and light responses. Importantly, genes exhibited organ-specific patterns in expression in cucumber. Furthermore, a gene was constitutively expressed at higher levels at different fruit development stages and might play a crucial role in cucumber fruit development. Collectively, our work will provide a better understanding for further function identifications of genes in Cucurbitaceae.

摘要

YABBY 转录因子在植物生长发育中发挥着重要作用。然而,关于葫芦科中的基因知之甚少。在这里,我们从 8 种葫芦科植物中鉴定出了 59 个基因,包括黄瓜( L.)、甜瓜( L.)、西瓜()、冬瓜()、南瓜()、笋瓜( L.)、银种葫芦()和葫芦()。这 59 个基因被聚类为五个亚家族,其中基因结构和基序保守,表明每个亚家族内具有相似的功能。8 种葫芦科植物中不同的基因数量表明,在进化过程中存在基因丢失或重复事件。- 作用元件分析表明,可能参与植物发育以及植物激素、胁迫和光响应。重要的是,基因在黄瓜中表现出器官特异性表达模式。此外,一个基因在不同的果实发育阶段持续高水平表达,可能在黄瓜果实发育中发挥关键作用。总的来说,我们的工作将为进一步鉴定葫芦科中的 基因的功能提供更好的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7f/8953090/274e928d1465/genes-13-00467-g001.jpg

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