Metabolomics Research Facility, Institute of Nuclear Medicine and Allied Sciences (INMAS), DRDO, Delhi, India.
Department of Biomedical Science, Shaheed Rajguru College of Applied Sciences for Women, University of Delhi, Delhi, India.
NPJ Syst Biol Appl. 2023 Sep 9;9(1):42. doi: 10.1038/s41540-023-00305-5.
Recent advancement in integrated multi-omics has significantly contributed to many areas of the biomedical field. Radiation research has also grasped uprising omics technologies in biomarker identification to aid in triage management. Herein, we have used a combinatorial multi-omics approach based on transcriptomics together with metabolomics and lipidomics of blood from murine exposed to 1 Gy (LD) and 7.5 Gy (HD) of total-body irradiation (TBI) for a comprehensive understanding of biological processes through integrated pathways and networking. Both omics displayed demarcation of HD group from controls using multivariate analysis. Dysregulated amino acids, various PC, PE and carnitine were observed along with many dysregulated genes (Nos2, Hmgcs2, Oxct2a, etc.). Joint-Pathway Analysis and STITCH interaction showed radiation exposure resulted in changes in amino acid, carbohydrate, lipid, nucleotide, and fatty acid metabolism. Elicited immune response was also observed by Gene Ontology. BioPAN has predicted Elovl5, Elovl6 and Fads2 for fatty acid pathways, only in HD group. Collectively, the combined omics approach facilitated a better understanding of processes uncovering metabolic pathways. Presumably, this is the first in radiation metabolomics that utilized an integrated omics approach following TBI in mice. Our work showed that omics integration could be a valuable tool for better comprehending the mechanism as well as molecular interactions.
近年来,综合多组学的进展极大地促进了生物医学领域的许多领域。辐射研究也在生物标志物识别方面掌握了新兴的组学技术,以辅助分诊管理。在此,我们使用了一种基于转录组学的组合多组学方法,结合了暴露于 1Gy(LD)和 7.5Gy(HD)全身照射(TBI)的小鼠血液的代谢组学和脂质组学,以通过整合途径和网络全面了解生物过程。这两种组学都使用多元分析将 HD 组与对照组区分开来。观察到氨基酸、各种 PC、PE 和肉碱的失调,以及许多失调基因(Nos2、Hmgcs2、Oxct2a 等)。联合途径分析和 STITCH 相互作用表明,辐射暴露导致氨基酸、碳水化合物、脂质、核苷酸和脂肪酸代谢发生变化。基因本体论还观察到诱发的免疫反应。BioPAN 预测了脂肪酸途径中的 Elovl5、Elovl6 和 Fads2,仅在 HD 组中。总的来说,综合组学方法有助于更好地理解过程,揭示代谢途径。据推测,这是小鼠 TBI 后首次在辐射代谢组学中使用综合组学方法。我们的工作表明,组学整合可能是更好地理解机制以及分子相互作用的有用工具。