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SETD2 缺失赋予肾癌对 DNA 甲基化和 PARP 双重抑制的敏感性。

SETD2 Deficiency Confers Sensitivity to Dual Inhibition of DNA Methylation and PARP in Kidney Cancer.

机构信息

Department of Urology, Keck School of Medicine, University of Southern California, Los Angeles, California.

Department of Urology, Xiangya Hospital, Central South University, Hunan, Changsha, China.

出版信息

Cancer Res. 2023 Nov 15;83(22):3813-3826. doi: 10.1158/0008-5472.CAN-23-0401.


DOI:10.1158/0008-5472.CAN-23-0401
PMID:37695044
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10843145/
Abstract

UNLABELLED: SETD2 deficiency alters the epigenetic landscape by causing depletion of H3K36me3 and plays an important role in diverse forms of cancer, most notably in aggressive and metastatic clear-cell renal cell carcinomas (ccRCC). Development of an effective treatment scheme targeting SETD2-compromised cancer is urgently needed. Considering that SETD2 is involved in DNA methylation and DNA repair, a combination treatment approach using DNA hypomethylating agents (HMA) and PARP inhibitors (PARPi) could have strong antitumor activity in SETD2-deficient kidney cancer. We tested the effects of the DNA HMA 5-aza-2'-dexoxydytidine (DAC), the PARPi talazoparib (BMN-673), and both in combination in human ccRCC models with or without SETD2 deficiency. The combination treatment of DAC and BMN-673 synergistically increased cytotoxicity in vitro in SETD2-deficient ccRCC cell lines but not in SETD2-proficient cell lines. DAC and BMN-673 led to apoptotic induction, increased DNA damage, insufficient DNA damage repair, and increased genomic instability. Furthermore, the combination treatment elevated immune responses, upregulated STING, and enhanced viral mimicry by activating transposable elements. Finally, the combination effectively suppressed the growth of SETD2-deficient ccRCC in in vivo mouse models. Together, these findings indicate that combining HMA and PARPi is a promising potential therapeutic strategy for treating SETD2-compromised ccRCC. SIGNIFICANCE: SETD2 deficiency creates a vulnerable epigenetic status that is targetable using a DNA hypomethylating agent and PARP inhibitor combination to suppress renal cell carcinoma, identifying a precision medicine-based approach for SETD2-compromised cancers.

摘要

未标记:SETD2 缺乏通过导致 H3K36me3 的耗竭来改变表观遗传景观,并在多种形式的癌症中发挥重要作用,尤其是在侵袭性和转移性透明细胞肾细胞癌(ccRCC)中。迫切需要开发针对 SETD2 受损癌症的有效治疗方案。考虑到 SETD2 参与 DNA 甲基化和 DNA 修复,使用 DNA 低甲基化剂(HMA)和 PARP 抑制剂(PARPi)的联合治疗方法在 SETD2 缺陷的肾癌中可能具有很强的抗肿瘤活性。我们测试了 DNA HMA 5-aza-2'-dexoxydytidine(DAC)、PARPi talazoparib(BMN-673)以及两者联合在有无 SETD2 缺乏的人 ccRCC 模型中的作用。DAC 和 BMN-673 的联合治疗在体外协同增加了 SETD2 缺陷的 ccRCC 细胞系的细胞毒性,但在 SETD2 功能正常的细胞系中则不然。DAC 和 BMN-673 导致细胞凋亡诱导、增加 DNA 损伤、DNA 损伤修复不足和基因组不稳定性增加。此外,联合治疗还通过激活转座元件提高了免疫反应、上调了 STING 并增强了病毒模拟。最后,该联合疗法有效地抑制了体内小鼠模型中 SETD2 缺陷 ccRCC 的生长。总之,这些发现表明,联合使用 HMA 和 PARPi 是治疗 SETD2 受损 ccRCC 的一种很有前途的潜在治疗策略。

意义:SETD2 缺乏会产生脆弱的表观遗传状态,可通过使用 DNA 低甲基化剂和 PARP 抑制剂联合抑制肾细胞癌来靶向治疗,这为 SETD2 受损癌症确定了一种基于精准医学的方法。

相似文献

[1]
SETD2 Deficiency Confers Sensitivity to Dual Inhibition of DNA Methylation and PARP in Kidney Cancer.

Cancer Res. 2023-11-15

[2]
SETD2 mutation in renal clear cell carcinoma suppress autophagy via regulation of ATG12.

Cell Death Dis. 2020-1-27

[3]
SETD2 loss-of-function promotes renal cancer branched evolution through replication stress and impaired DNA repair.

Oncogene. 2015-11-12

[4]
Loss of SETD2, but not H3K36me3, correlates with aggressive clinicopathological features of clear cell renal cell carcinoma patients.

Biosci Trends. 2017-5-23

[5]
RNA mis-splicing drives viral mimicry response after DNMTi therapy in SETD2-mutant kidney cancer.

Cell Rep. 2023-1-31

[6]
Loss of MLH1 confers resistance to PI3Kβ inhibitors in renal clear cell carcinoma with SETD2 mutation.

Tumour Biol. 2015-5

[7]
High-resolution profiling of histone h3 lysine 36 trimethylation in metastatic renal cell carcinoma.

Oncogene. 2016-3-24

[8]
Haploinsufficiency for Microtubule Methylation Is an Early Driver of Genomic Instability in Renal Cell Carcinoma.

Cancer Res. 2018-5-3

[9]
Inactivation and Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas.

Cancer Res. 2017-9-15

[10]
Dynamic reprogramming of DNA methylation in SETD2-deregulated renal cell carcinoma.

Oncotarget. 2016-1-12

引用本文的文献

[1]
Metabolism and epigenetics in cancer: toward personalized treatment.

Front Endocrinol (Lausanne). 2025-7-25

[2]
The activation of cGAS-STING pathway offers novel therapeutic opportunities in cancers.

Front Immunol. 2025-6-9

[3]
fusion driven () non-small cell lung cancer: a comprehensive genomic profiling study with histologic correlation.

Front Oncol. 2025-5-16

[4]
SETD2 loss-of-function uniquely sensitizes cells to epigenetic targeting of NSD1-directed H3K36 methylation.

Genome Biol. 2025-2-5

[5]
Phospho-TRIM21 orchestrates RPA2 ubiquitination switch to promote homologous recombination and tumor radio/chemo-resistance.

Oncogene. 2025-5

[6]
Loss of SETD2 in wild-type VHL clear cell renal cell carcinoma sensitizes cells to STF-62247 and leads to DNA damage, cell cycle arrest, and cell death characteristic of pyroptosis.

Mol Oncol. 2025-4

[7]
Systematic multiomics analysis and in vitro experiments suggest that ITGA5 could serve as a promising therapeutic target for ccRCC.

Cancer Cell Int. 2024-11-5

[8]
A Multi-Omics Prognostic Model Capturing Tumor Stemness and the Immune Microenvironment in Clear Cell Renal Cell Carcinoma.

Biomedicines. 2024-9-24

[9]
SETD2 in cancer: functions, molecular mechanisms, and therapeutic regimens.

Cancer Biol Med. 2024-9-19

[10]
Combination of PARP and DNA methylation inhibitors as a potential personalized therapy for SETD2-mutated clear-cell renal cancers.

Transl Androl Urol. 2024-7-31

本文引用的文献

[1]
RNA mis-splicing drives viral mimicry response after DNMTi therapy in SETD2-mutant kidney cancer.

Cell Rep. 2023-1-31

[2]
Integrated clinical and genomic evaluation of guadecitabine (SGI-110) in peripheral T-cell lymphoma.

Leukemia. 2022-6

[3]
SETD2 loss perturbs the kidney cancer epigenetic landscape to promote metastasis and engenders actionable dependencies on histone chaperone complexes.

Nat Cancer. 2022-2

[4]
Phase I Clinical Trial of DNA Methyltransferase Inhibitor Decitabine and PARP Inhibitor Talazoparib Combination Therapy in Relapsed/Refractory Acute Myeloid Leukemia.

Clin Cancer Res. 2022-4-1

[5]
Genomic instability, inflammatory signaling and response to cancer immunotherapy.

Biochim Biophys Acta Rev Cancer. 2022-1

[6]
Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia.

Nat Cancer. 2021-10

[7]
Cell cycle control in cancer.

Nat Rev Mol Cell Biol. 2022-1

[8]
5-Aza-4'-thio-2'-deoxycytidine, a New Orally Bioavailable Nontoxic "Best-in-Class": DNA Methyltransferase 1-Depleting Agent in Clinical Development.

J Pharmacol Exp Ther. 2021-11

[9]
Histone and Chromatin Dynamics Facilitating DNA repair.

DNA Repair (Amst). 2021-11

[10]
Prognostic Impact of Loss of SETD2 in Clear Cell Renal Cell Carcinoma.

Clin Genitourin Cancer. 2021-8

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