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将适应性基因组变异纳入入侵风险评估的预测模型。

Incorporating adaptive genomic variation into predictive models for invasion risk assessment.

作者信息

Chen Yiyong, Gao Yangchun, Huang Xuena, Li Shiguo, Zhang Zhixin, Zhan Aibin

机构信息

Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.

Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Science, Guangzhou, 510260, China.

出版信息

Environ Sci Ecotechnol. 2023 Jul 11;18:100299. doi: 10.1016/j.ese.2023.100299. eCollection 2024 Mar.

DOI:10.1016/j.ese.2023.100299
PMID:37701243
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10494315/
Abstract

Global climate change is expected to accelerate biological invasions, necessitating accurate risk forecasting and management strategies. However, current invasion risk assessments often overlook adaptive genomic variation, which plays a significant role in the persistence and expansion of invasive populations. Here we used , a highly invasive ascidian, as a model to assess its invasion risks along Chinese coasts under climate change. Through population genomics analyses, we identified two genetic clusters, the north and south clusters, based on geographic distributions. To predict invasion risks, we employed the gradient forest and species distribution models to calculate genomic offset and species habitat suitability, respectively. These approaches yielded distinct predictions: the gradient forest model suggested a greater genomic offset to future climatic conditions for the north cluster (i.e., lower invasion risks), while the species distribution model indicated higher future habitat suitability for the same cluster (i.e, higher invasion risks). By integrating these models, we found that the south cluster exhibited minor genome-niche disruptions in the future, indicating higher invasion risks. Our study highlights the complementary roles of genomic offset and habitat suitability in assessing invasion risks under climate change. Moreover, incorporating adaptive genomic variation into predictive models can significantly enhance future invasion risk predictions and enable effective management strategies for biological invasions in the future.

摘要

预计全球气候变化将加速生物入侵,因此需要准确的风险预测和管理策略。然而,当前的入侵风险评估往往忽视了适应性基因组变异,而这种变异在入侵种群的存续和扩张中起着重要作用。在此,我们以一种高度入侵性的海鞘为模型,评估其在气候变化下沿中国海岸的入侵风险。通过群体基因组学分析,我们根据地理分布确定了两个遗传簇,即北部簇和南部簇。为了预测入侵风险,我们分别采用梯度森林模型和物种分布模型来计算基因组偏移和物种栖息地适宜性。这些方法得出了不同的预测结果:梯度森林模型表明,北部簇对未来气候条件的基因组偏移更大(即入侵风险较低),而物种分布模型则显示同一簇未来的栖息地适宜性较高(即入侵风险较高)。通过整合这些模型,我们发现南部簇在未来表现出较小的基因组-生态位不匹配,表明其入侵风险较高。我们的研究突出了基因组偏移和栖息地适宜性在评估气候变化下入侵风险中的互补作用。此外,将适应性基因组变异纳入预测模型可以显著提高对未来入侵风险的预测,并为未来生物入侵制定有效的管理策略。

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本文引用的文献

1
The combination of genomic offset and niche modelling provides insights into climate change-driven vulnerability.基因组偏移和生态位建模的结合为气候变化驱动的脆弱性提供了深入的见解。
Nat Commun. 2022 Aug 16;13(1):4821. doi: 10.1038/s41467-022-32546-z.
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Complementary genomic and epigenomic adaptation to environmental heterogeneity.互补的基因组和表观基因组适应环境异质性。
Mol Ecol. 2022 Jul;31(13):3598-3612. doi: 10.1111/mec.16500. Epub 2022 May 27.
3
Neighbours matter: Effects of genomic organization on gene expression plasticity in response to environmental stresses during biological invasions.
利用基因组数据预测物种入侵性:基因组偏移与定殖概率有关吗?
Evol Appl. 2024 Jun 14;17(6):e13709. doi: 10.1111/eva.13709. eCollection 2024 Jun.
邻居很重要:基因组组织对生物入侵过程中应对环境胁迫的基因表达可塑性的影响。
Comp Biochem Physiol Part D Genomics Proteomics. 2022 Jun;42:100992. doi: 10.1016/j.cbd.2022.100992. Epub 2022 Apr 27.
4
Large-scale genome-wide study reveals climate adaptive variability in a cosmopolitan pest.大规模全基因组研究揭示了世界性害虫的气候适应性变异。
Nat Commun. 2021 Dec 10;12(1):7206. doi: 10.1038/s41467-021-27510-2.
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The evolutionary genomics of species' responses to climate change.物种对气候变化响应的进化基因组学。
Nat Ecol Evol. 2021 Oct;5(10):1350-1360. doi: 10.1038/s41559-021-01526-9. Epub 2021 Aug 9.
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Genomics-informed models reveal extensive stretches of coastline under threat by an ecologically dominant invasive species.基因组信息模型揭示了受生态优势入侵物种威胁的大片海岸线。
Proc Natl Acad Sci U S A. 2021 Jun 8;118(23). doi: 10.1073/pnas.2022169118.
7
Local environment-driven adaptive evolution in a marine invasive ascidian ().海洋入侵被囊动物中由局部环境驱动的适应性进化()
Ecol Evol. 2021 Mar 6;11(9):4252-4266. doi: 10.1002/ece3.7322. eCollection 2021 May.
8
Distinct interspecific and intraspecific vulnerability of coastal species to global change.沿海物种对全球变化存在明显的种间和种内脆弱性。
Glob Chang Biol. 2021 Aug;27(15):3415-3431. doi: 10.1111/gcb.15651. Epub 2021 May 14.
9
High and rising economic costs of biological invasions worldwide.生物入侵的全球经济成本高昂且不断上升。
Nature. 2021 Apr;592(7855):571-576. doi: 10.1038/s41586-021-03405-6. Epub 2021 Mar 31.
10
Experimental support for genomic prediction of climate maladaptation using the machine learning approach Gradient Forests.使用机器学习方法梯度森林为气候不适应的基因组预测提供实验支持。
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