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马来西亚半岛罗氏竹节树转录组的从头组装和功能注释数据。

Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Roxb. species.

作者信息

Fareed Fathmath Shaman, Yen Yen Sam, Singaram Nallammai

机构信息

School of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, Malaysia.

Forest Research Institute, Kepong, 52109, Kuala Lumpur, Selangor, Malaysia.

出版信息

Data Brief. 2023 Aug 21;50:109507. doi: 10.1016/j.dib.2023.109507. eCollection 2023 Oct.

DOI:10.1016/j.dib.2023.109507
PMID:37701715
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10493248/
Abstract

The genus comprises of perennial, tropical, herbaceous plants that are distributed globally and possess both medicinal and ornamental properties. These plants contain a variety of secondary metabolites, including compounds with antioxidant and antimicrobial properties. This is the first transcriptomic analysis of seven species from Peninsular Malaysia, utilizing leaves, stems, and roots as sample material. Paired-end Illumina HiSeq technology was used for data generation which includes raw data, cleaned reads, de novo assembly, and functional annotation. The data is accessible via NCBI BioProject (PRJNA936673).

摘要

该属包括多年生热带草本植物,分布于全球,具有药用和观赏特性。这些植物含有多种次生代谢产物,包括具有抗氧化和抗菌特性的化合物。这是对马来西亚半岛七种植物的首次转录组分析,使用叶、茎和根作为样本材料。采用双端Illumina HiSeq技术进行数据生成,包括原始数据、清理后的 reads、从头组装和功能注释。数据可通过NCBI生物项目(PRJNA936673)获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/5c09ed7bccb4/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/3f60247d4327/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/23a9ce75510c/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/964bc45d71c4/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/5c09ed7bccb4/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/3f60247d4327/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/23a9ce75510c/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/964bc45d71c4/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d41/10493248/5c09ed7bccb4/gr4.jpg

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