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韩国特有植物朝鲜虎耳草(Saxifragaceae)完整质体基因组的特征及系统发育意义 (中井)Y.I. 金 & Y.D. 金

Characterization of the complete plastid genome and phylogenetic implication of (Nakai) Y.I.Kim & Y.D.Kim (Saxifragaceae), endemic to Korea.

作者信息

Kim Tae-Hee, Ha Young-Ho, Kim Sang-Chul, Kim Hyuk-Jin

机构信息

Division of Forest Biodiversity, Korea National Arboretum, Pocheon-Si, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2023 Sep 12;8(9):967-972. doi: 10.1080/23802359.2023.2256051. eCollection 2023.

Abstract

(Nakai) Y.I.Kim & Y.D. Kim et al. 2015, which belongs to the family Saxifragaceae, is a perennial herb endemic to Korea. was originally treated as a synonym of . However, in 2015, molecular phylogenetic analysis confirmed that is an independent species. In this study, the plastid genome of was sequenced for the first time, and the taxonomic position of this species was identified. The complete plastid genome of has a total length of 149 751 bp (large single copy: 83 083 bp; small single copy: 17 196 bp; inverted repeat: 24 736 bp), containing 130 genes, including 79 CDS, 30 tRNAs, and 4 rRNAs. Moreover, the absence of intron in the 2 gene, which is a common feature of Saxifragaceae, was confirmed. Phylogenetic analysis based on 79 protein-coding genes from 21 species revealed that belongs to the genus being a sister to other species. The plastid genome of obtained in this study provides fundamental information for future studies on the genus .

摘要

(中井氏)Y.I.金和Y.D.金等人于2015年发现,它属于虎耳草科,是韩国特有的一种多年生草本植物。它最初被视为[某物种]的同义词。然而,在2015年,分子系统发育分析证实它是一个独立的物种。在本研究中,首次对[该物种名称]的质体基因组进行了测序,并确定了该物种的分类地位。[该物种名称]的完整质体基因组全长149751bp(大单拷贝:83083bp;小单拷贝:17196bp;反向重复:24736bp),包含130个基因,其中包括79个编码序列、30个tRNA和4个rRNA。此外,证实了2个基因中不存在内含子,这是虎耳草科的一个共同特征。基于21个物种的79个蛋白质编码基因的系统发育分析表明,[该物种名称]属于[某属名称],是其他[该属其他物种名称]物种的姐妹种。本研究中获得的[该物种名称]的质体基因组为该属的未来研究提供了基础信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e2b/10498808/35e63c3e767b/TMDN_A_2256051_F0001_C.jpg

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