Faculty of Architecture and City Planning, Kunming University of Science and Technology, Kunming 650500, China.
College of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Genes (Basel). 2023 Aug 30;14(9):1737. doi: 10.3390/genes14091737.
Plant homeodomain (PHD) transcription factor genes are involved in plant development and in a plant's response to stress. However, there are few reports about this gene family in peppers ( L.). In this study, the pepper inbred line "Zunla-1" was used as the reference genome, and a total of 43 genes were identified, and systematic analysis was performed to study the chromosomal location, evolutionary relationship, gene structure, domains, and upstream cis-regulatory elements of the genes. The fewest genes were located on chromosome 4, while the most were on chromosome 3. Genes with similar gene structures and domains were clustered together. Expression analysis showed that the expression of genes was quite different in different tissues and in response to various stress treatments. The expression of was different in the early stage of flower bud development in the near-isogenic cytoplasmic male-sterile inbred and the maintainer inbred lines. It is speculated that this gene is involved in the development of male sterility in pepper. was significantly upregulated in leaves and roots after heat stress, and it is speculated that plays an important role in tolerating heat stress in pepper; in addition, , , , , , , and were not sensitive to abiotic stress or hormonal factors. This study will provide the basis for further research into the function of genes in plant development and responses to abiotic stresses and hormones.
植物同源异型结构域(PHD)转录因子基因参与植物发育和植物对胁迫的响应。然而,关于辣椒(L.)中这个基因家族的报道很少。在本研究中,以辣椒自交系“Zunla-1”为参考基因组,共鉴定到 43 个基因,并对这些基因的染色体定位、进化关系、基因结构、结构域和上游顺式调控元件进行了系统分析。基因数量最少的位于第 4 号染色体,而最多的位于第 3 号染色体。具有相似基因结构和结构域的基因聚集在一起。表达分析表明,基因的表达在不同组织和对各种胁迫处理的反应中存在显著差异。在近等基因细胞质雄性不育自交系和保持系花蕾发育的早期,的表达存在差异。推测该基因参与了辣椒雄性不育的发育。在热胁迫后,基因在叶片和根中显著上调,推测基因在辣椒耐受热胁迫中发挥重要作用;此外,基因对非生物胁迫或激素因素不敏感。本研究将为进一步研究基因在植物发育和对非生物胁迫及激素响应中的功能提供基础。