Department of Immunology and Pathogenic Biology, Yanbian University Medical College, Yanji 133002, China.
Laboratory of Cutaneous Immunology, Osaka University Immunology Frontier Research Center, Department of Dermatology, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan.
Int J Mol Sci. 2023 Sep 6;24(18):13752. doi: 10.3390/ijms241813752.
As a metastasis-prone malignancy, the metastatic form and location of melanoma seriously affect its prognosis. Although effective surgical methods and targeted drugs are available to enable the treatment of carcinoma in situ, for metastatic tumors, the diagnosis, prognosis assessment and development of immunotherapy are still pending. This study aims to integrate multiple bioinformatics approaches to identify immune-related molecular targets viable for the treatment and prognostic assessment of metastatic melanoma, thus providing new strategies for its use as an immunotherapy. Immunoinfiltration analysis revealed that M1-type macrophages have significant infiltration differences in melanoma development and metastasis. In total, 349 genes differentially expressed in M1-type macrophages and M2-type macrophages were extracted from the MSigDB database. Then we derived an intersection of these genes and 1111 melanoma metastasis-related genes from the GEO database, and 31 intersected genes identified as melanoma macrophage immunomarkers (MMIMs) were obtained. Based on MMIMs, a risk model was constructed using the Lasso algorithm and regression analysis, which contained 10 genes (NMI, SNTB2, SLC1A4, PDE4B, CLEC2B, IFI27, COL1A2, MAF, LAMP3 and CCDC69). Patients with high+ risk scores calculated via the model have low levels of infiltration by CD8 T cells and macrophages, which implies a poor prognosis for patients with metastatic cancer. DCA decision and nomogram curves verify the high sensitivity and specificity of this model for metastatic cancer patients. In addition, 28 miRNAs, 90 transcription factors and 29 potential drugs were predicted by targeting the 10 MMIMs derived from this model. Overall, we developed and validated immune-related prognostic models, which accurately reflected the prognostic and immune infiltration characteristics of patients with melanoma metastasis. The 10 MMIMs may also be prospective targets for immunotherapy.
作为一种易转移的恶性肿瘤,黑色素瘤的转移形式和部位严重影响其预后。虽然有效的手术方法和靶向药物可用于治疗原位癌,但对于转移性肿瘤,其诊断、预后评估和免疫治疗的发展仍有待解决。本研究旨在整合多种生物信息学方法,鉴定免疫相关的分子靶点,以用于治疗和预后评估转移性黑色素瘤,从而为其免疫治疗提供新策略。免疫浸润分析表明,M1 型巨噬细胞在黑色素瘤的发生和转移中具有显著的浸润差异。从 MSigDB 数据库中总共提取了 M1 型巨噬细胞和 M2 型巨噬细胞中差异表达的 349 个基因。然后,我们从 GEO 数据库中获得了这些基因与 1111 个黑色素瘤转移相关基因的交集,并获得了 31 个鉴定为黑色素瘤巨噬细胞免疫标志物(MMIMs)的交集基因。基于 MMIMs,使用 Lasso 算法和回归分析构建了一个风险模型,该模型包含 10 个基因(NMI、SNTB2、SLC1A4、PDE4B、CLEC2B、IFI27、COL1A2、MAF、LAMP3 和 CCDC69)。通过模型计算得到的高+风险评分的患者,其 CD8 T 细胞和巨噬细胞浸润水平较低,这意味着转移性癌症患者的预后较差。DCA 决策和诺莫图曲线验证了该模型对转移性癌症患者的高敏感性和特异性。此外,通过靶向该模型中得出的 10 个 MMIMs,预测了 28 个 miRNA、90 个转录因子和 29 种潜在药物。总的来说,我们开发和验证了免疫相关的预后模型,这些模型准确反映了转移性黑色素瘤患者的预后和免疫浸润特征。这 10 个 MMIMs 也可能是免疫治疗的有前途的靶点。