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铁死亡调节因子NOS2与肝母细胞瘤的预后及细胞恶性行为密切相关:一项生物信息学研究

Ferroptosis regulator NOS2 is closely associated with the prognosis and cell malignant behaviors of hepatoblastoma: a bioinformatic and study.

作者信息

Zhang Lan, Ren Bin-Cheng, Wei Fei, Liu Yan, Gao Ya, Yuan Bo

机构信息

Department of Pediatrics, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

Department of Rheumatology and Immunology, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

出版信息

Front Oncol. 2023 Sep 19;13:1228199. doi: 10.3389/fonc.2023.1228199. eCollection 2023.

Abstract

BACKGROUND

Hepatoblastoma (HB) is the most common liver tumor in children with easy metastasis. The emergence of ferroptosis as a novel form of cell death has gained increased attention in various human cancers. However, the roles of ferroptosis-related (FR) genes in HB remain elusive.

METHODS

The GSE133039, GSE131329, and GSE81928 datasets were utilized for screening core FR genes in HB. Through Lasso regression analysis and using the support vector machine recursive feature elimination (SVM-RFE) algorithm, three candidate FR genes were obtained for characterizing HB. Their expression patterns and their clinical associations were explored through the 'Limma' R package, and their diagnostic potential was evaluated using ROC curves. Nitric oxide synthase 2 (NOS2) emerged as a candidate for further analyses. The CIBERSORT algorithm and GSEA dataset were used to respectively investigate the immune and metabolism effects of NOS2; the former was validated through immunofluorescence. The GSDC database was employed to analyze the correlation between NOS2 expression and the therapeutic efficacy of multiple drugs. PCR, Western blotting, colony formation assays, and Transwell experiments, were used to determine biological functions of NOS2 in HB cells. Potential upstream transcription factors of NOS2 were predicted through the TRRUST, hTFtarget, GeneCards, and JASPAR databases.

RESULTS

NQO1, SLC1A4, and NOS2 were identified as potential genes in HB and found to be significantly upregulated in tumor samples. Nevertheless, only NOS2 was closely associated with HB clinicopathological characteristics; high NOS2 expression indicated poor prognosis, metastatic tendency, and late clinical stage. Immune analyses indicated that high NOS2 expression was concomitant with decreased infiltration levels of CD8+ T cells but increased infiltration levels of macrophages. GSEA revealed that NOS2 failed to affect the enrichments of glycolysis, fatty acid metabolism, and cholesterol biosynthesis in HB. Moreover, NOS2 was positively correlated with the IC values of trametinib, lapatinib, and cisplatin. NOS2 overexpression promoted the proliferation, migration and invasion of HepG2 and HuH-6 cells. JUND was identified as a potential transcriptional regulator of NOS2 by binding to its promoter (5'-TTCTGACTCTTTT-3').

CONCLUSION

NOS2 plays a significant role in HB clinical assessments and holds promise as a novel therapeutic target.

摘要

背景

肝母细胞瘤(HB)是儿童最常见的肝脏肿瘤,易发生转移。铁死亡作为一种新型细胞死亡形式,在各种人类癌症中受到越来越多的关注。然而,铁死亡相关(FR)基因在HB中的作用仍不清楚。

方法

利用GSE133039、GSE131329和GSE81928数据集筛选HB中的核心FR基因。通过套索回归分析并使用支持向量机递归特征消除(SVM-RFE)算法,获得了三个用于表征HB的候选FR基因。通过“Limma”R包探索它们的表达模式及其临床关联,并使用ROC曲线评估它们的诊断潜力。一氧化氮合酶2(NOS2)成为进一步分析的候选基因。使用CIBERSORT算法和GSEA数据集分别研究NOS2的免疫和代谢作用;前者通过免疫荧光进行验证。使用GSDC数据库分析NOS2表达与多种药物治疗效果之间的相关性。采用PCR、蛋白质印迹、集落形成试验和Transwell实验来确定NOS2在HB细胞中的生物学功能。通过TRRUST、hTFtarget、GeneCards和JASPAR数据库预测NOS2的潜在上游转录因子。

结果

NQO1、SLC1A4和NOS2被确定为HB中的潜在基因,并且在肿瘤样本中显著上调。然而,只有NOS2与HB临床病理特征密切相关;NOS2高表达表明预后不良、有转移倾向和临床分期较晚。免疫分析表明,NOS2高表达与CD8+T细胞浸润水平降低但巨噬细胞浸润水平增加有关。GSEA显示,NOS2未能影响HB中糖酵解、脂肪酸代谢和胆固醇生物合成的富集。此外,NOS2与曲美替尼、拉帕替尼和顺铂的IC值呈正相关。NOS2过表达促进了HepG2和HuH-6细胞的增殖、迁移和侵袭。通过与NOS2启动子(5'-TTCTGACTCTTTT-3')结合,JUND被确定为NOS2的潜在转录调节因子。

结论

NOS2在HB临床评估中起重要作用,有望成为新型治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecb1/10546316/f9c41c8a9242/fonc-13-1228199-g001.jpg

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