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全基因组结构预测揭示了木质纤维素降解子囊菌 NO1 中潜在氧化酶的隐藏多样性。

Whole genome structural predictions reveal hidden diversity in putative oxidative enzymes of the lignocellulose-degrading ascomycete NO1.

机构信息

Department of Biology, Centre for Novel Agricultural Products, University of York , York, United Kingdom.

Department of Biology, Bioscience Technology Facility, University of York , York, United Kingdom.

出版信息

Microbiol Spectr. 2023 Dec 12;11(6):e0103523. doi: 10.1128/spectrum.01035-23. Epub 2023 Oct 9.

DOI:10.1128/spectrum.01035-23
PMID:37811978
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10714830/
Abstract

An annotated reference genome has revealed NO1 as a useful resource for the identification of new lignocellulose-degrading enzymes for biorefining of woody plant biomass. Utilizing a "structure-omics"-based searching strategy, we identified new potentially lignocellulose-active sequences that would have been missed by traditional sequence searching methods. These new identifications, alongside the discovery of novel enzymatic functions from this underexplored lineage with the recent discovery of a new phenol oxidase that cleaves the main structural β-O-4 linkage in lignin from NO1, highlight the underexplored and poorly represented family Microascaceae as a particularly interesting candidate worthy of further exploration toward the valorization of high value biorenewable products.

摘要

一份标注参考基因组揭示,NO1 是一种有用的资源,可用于鉴定新型木质纤维素降解酶,以实现木质植物生物质的生物炼制。利用基于“结构组学”的搜索策略,我们鉴定了新的潜在木质纤维素活性序列,如果采用传统的序列搜索方法,这些序列可能会被遗漏。这些新的发现,以及从这个研究较少的谱系中发现的新型酶功能,最近还发现了一种新的酚氧化酶,能够从 NO1 中切断木质素中的主要结构β-O-4 键,突出了研究较少且代表性不足的小丛壳科作为一个特别有趣的候选者,值得进一步探索,以实现高附加值生物可再生产品的增值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/81f07019e8c0/spectrum.01035-23.f006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/cae66e18b2d4/spectrum.01035-23.f001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/e23848e96e11/spectrum.01035-23.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/3a722d014018/spectrum.01035-23.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/d6b309e1c2c0/spectrum.01035-23.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/81f07019e8c0/spectrum.01035-23.f006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/cae66e18b2d4/spectrum.01035-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/1fab9455a60e/spectrum.01035-23.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/e23848e96e11/spectrum.01035-23.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/3a722d014018/spectrum.01035-23.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/d6b309e1c2c0/spectrum.01035-23.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a7b/10714830/81f07019e8c0/spectrum.01035-23.f006.jpg

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NO1 tailors its secretome for different lignocellulosic substrates.
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